Professor M Carmen Romano | The School of Natural and Computing Sciences

Professor M Carmen Romano

Personal Chair

Email Address: m.romano@abdn.ac.uk
Telephone Number: +44 (0)1224 272507
Office Address: Office 337, Institute for Complex Systems and Mathematical Biology, Department of Physics, Meston Building, Old Aberdeen Office 3:47, Institute of Medical Sciences, Foresterhill
School/Department: School of Natural and Computing Sciences

Research Overview

I am interested in the understanding of fundamental biological processes using theoretical approaches based on nonlinear dynamics and statistical physics and combining them with experimental data. In particular, I am interested in the process of translation or synthesis of proteins, the coupling between transcription and translation, how ribosomes, the molecular machines that manufacture proteins, are synthesised, and its relationship to the cell cycle. I am furthermore interested in the effect of combinatorial stresses in yeast, as well as the effects of different types of stress on the cell cycle.

Funding and Grants

SULSA studentship (modeling of translation)/ SABR grant (Combinatorial Responses In Stress Pathways)/BBSRC grant (Ribosome Traffic Flow on the mRNA as a Regulator of Cellular Protein Production)

Teaching

Teaching Responsibilities

Electromagnetism (PX3008, 3rd year Physics) and Introduction to Mathematics and Modelling of Biological Systems (SB5005, MSc in Cell and Molecular Systems Biology)

Publications

Page 1 of 2 Results 1 to 50 of 73

What determines sub-diffusive behavior in crowded protein solutions?
2024 - Published
Kompella, V. P. S., Romano, M. C., Stansfield, I., Mancera, R. L.
Biophysical Journal, vol. 123, no. 2, pp. 134-146
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.bpj.2023.12.002
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/22608/1/Srikanth_etal_BJ_What_Determines_Sub-diffusive_AAM.pdf
- [ONLINE] View publication in Scopus
ExpressInHost: A codon tuning tool for the expression of recombinant proteins in host microorganisms
2023 - Published
Raguin, A., Stansfield, I., Romano, M. C.
Journal of Open Research Software, vol. 11, no. 2
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.5334/jors.385
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19959/1/Raguin_etal_JORS_Expressinhost_A_Codon_VoR.pdf
Two-species totally asymmetric simple exclusion process model: From a simple description to intermittency and traveling traffic jams
2022 - Published
Bonnin, P., Stansfield, I., Romano, M. C., Kern, N.
Physical Review E, vol. 105, no. 3, 034117
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.105.034117
The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels
2020 - Published
McFarland, M. R., Keller, C. D., Childers, B. M., Adeniyi, S. A., Corrigall, H., Raguin, A., Romano, M. C., Stansfield, I.
Nucleic Acids Research, vol. 48, no. 6, pp. 3071-3088
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkaa055
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12805/1/BioRxiv_molecular_aetiology_McFarland_et_al.pdf
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12805/2/McFarland_etal_NAR_Molecular_Aetiology_VOR.pdf
- [ONLINE] View publication in Scopus
Translational control of gene expression via interacting feedback loops
2019 - Published
Wang, L., Romano, M. C., Davidson, F. A.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 100, no. 5, 050402(R)
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.100.050402
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/13536/1/Wang_et_al_PhysRevE_TranslationalControl_VoR.pdf
- [ONLINE] View publication in Scopus
Definition Of The Minimal Contents For The Molecular Simulation Of The Yeast Cytoplasm
2019 - Published
Kompella, V. P. S., Stansfield, I., Romano, M. C., Mancera, R. L.
Frontiers in Molecular Biosciences, vol. 6, 97
Contributions to Journals: Articles
- [ONLINE] https://www.frontiersin.org/articles/10.3389/fmolb.2019.00097/full#supplementary-material
- [ONLINE] DOI: https://doi.org/10.3389/fmolb.2019.00097
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/13056/1/fmolb_Kompella_et_al_Definition_of_minimal_contents_VoR.pdf
- [ONLINE] View publication in Scopus
Power series solution of the inhomogeneous exclusion process
2018 - Published
Szavits-Nossan, J., Romano, M. C., Ciandrini, L.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 97, no. 5, 052139
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.97.052139
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11267/1/PhysRevE.97.052139.pdf
Deciphering mRNA Sequence Determinants of Protein Production Rate
2018 - Published
Szavits-Nossan, J., Ciandrini, L., Romano, M. C.
Physical Review Letters, vol. 120, no. 12, 128101
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.120.128101
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/10284/1/PhysRevLett.120.128101.pdf
Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile
2017 - Published
Bonnin, P., Kern, N., Young, N. T., Stansfield, I., Romano, M. C.
PLoS Computational Biology , vol. 13, no. 5, e1005555
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pcbi.1005555
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11474/1/Novel_mRNA_specific_effects_of_ribosome_drop_off_on_translation_rate_and_polysome_profile.pdf
Synthetic biology routes to bio-artificial intelligence
2016 - Published
Nesbeth, D. N., Zaikin, A., Saka, Y., Romano, M. C., Giuraniuc, C. V., Kanakov, O., Laptyeva, T.
Essays in Biochemistry, vol. 60, no. 4, pp. 381-391
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1042/EBC20160014
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8080/1/Synthetic_biology_routes_to_bio_artificial_intelligence.pdf
Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation
2016 - Published
Gorgoni, B., Ciandrini, L., McFarland, M. R., Romano, M. C., Stansfield, I.
Nucleic Acids Research, vol. 44, no. 19, pp. 9231-9244
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkw630
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/6223/6/Nucl._Acids_Res._2016_Gorgoni_9231_44.pdf
Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans
2015 - Published
Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P., Romano, M. C.
PloS ONE, vol. 10, no. 9, 0137750
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0137750
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/4938/1/Integrative_Model_of_Oxidative_Stress.pdf
Minimal model of transcriptional elongation processes with pauses
2014 - Published
Wang, J., Pfeuty, B., Thommen, Q., Romano Blasco, M. C., Lefranc, M.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 90, no. 5, pp. 1-4
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.90.050701
Ribosome recycling induces optimal translation rate at low ribosomal availability
2014 - Published
Marshall, E., Stansfield, I., Romano, M. C.
Journal of the Royal Society Interface, vol. 11, no. 98, 20140589
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1098/rsif.2014.0589
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3532/1/J._R._Soc._Interface_2014_Marshall_.pdf
Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective
2014 - Published
Ciandrini, L., Romano, M. C., Parmeggiani, A.
Biophysical Journal, vol. 107, no. 5, pp. 1176-1184
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.bpj.2014.07.012
Identifying coupling directions by recurrences
2014 - Published
Zou, Y., Romano, M. C., Thiel, M., Kurths, J.
Recurrence Quantification Analysis: Theory and Best Practices - Part I. Webber Jr, C. L., Marwan, N. (eds.). Springer Verlag, pp. 65-99, 35 pages
Chapters in Books, Reports and Conference Proceedings: Chapters
- [ONLINE] DOI: https://doi.org/10.1007/978-3-319-07155-8_3
- [ONLINE] View publication in Scopus
Controlling translation elongation efficiency: tRNA regulation of ribosome flux on the mRNA
2014 - Published
Gorgoni, B., Marshall, E., McFarland, M. R., Romano, M. C., Stansfield, I.
Biochemical Society Transactions, vol. 42, no. 1, pp. 160-165
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1042/BST20130132
Dominant-negative release factors and their effect on termination and translational recoding events
2014 - Unpublished
McFarland, M. R., Romano, M. C., Stansfield, I.
RNA UK 2014
Contributions to Conferences: Posters
The wiper model: avalanche dynamics in an exclusion process
2013 - Published
Politi, A., Romano, M. C.
Journal of statistical mechanics-Theory and experiment, vol. 2013, 10015
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1088/1742-5468/2013/10/P10015
From START to FINISH: the influence of osmotic stress on the cell cycle
2013 - Published
Radmaneshfar, E., Kaloriti, D., Gustin, M. C., Gow, N. A. R., Brown, A. J. P., Grebogi, C., Romano, M. C., Thiel, M.
PloS ONE, vol. 8, no. 7, e68067
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0068067
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3166/1/2013_Elahe_cell_cycle_modelling.pdf
Dominant-negative release factors and their effect on termination and translational recoding events
2013 - Unpublished
McFarland, M. R., Romano, M. C., Stansfield, I.
Translation UK 2013
Contributions to Conferences: Posters
Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation
2013 - Published
Ciandrini, L., Stansfield, I., Romano, M. C.
PLoS Computational Biology , vol. 9, no. 1, e1002866
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pcbi.1002866
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3677/1/Ribosome_traffic.pdf
A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation
2013 - Published
Kemp, A., Betney, R., Ciandrini, L., Schwenger, A. C., Romano, M. C., Stansfield, I.
Molecular Microbiology, vol. 87, no. 2, pp. 284–300
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/mmi.12096
Transport on a lattice with dynamical defects
2013 - Published
Turci, F., Parmeggiani, A., Pitard, E., Romano, M. C., Ciandrini, L.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 87, no. 1, 012705
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.87.012705
Combinatorial stresses kill pathogenic Candida species
2012 - Published
Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K., Brown, A. J. P.
Medical Mycology, vol. 50, no. 7, pp. 699-709
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.3109/13693786.2012.672770
A max-plus model of ribosome dynamics during mRNA translation
2012 - Published
Brackley, C. A., Broomhead, D. S., Romano, M. C., Thiel, M.
Journal of Theoretical Biology, vol. 303, no. -, pp. 128-140
Contributions to Journals: Articles
- [ONLINE] http://arxiv.org/abs/1105.3580v1
- [ONLINE] DOI: https://doi.org/10.1016/j.jtbi.2012.03.007
Impact of combinatorial stresses upon Candida albicans
2012 - Published
Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R., Brown, A. J. P.
Mycoses, vol. 55, no. Suppl. 4, pp. 15
Contributions to Journals: Abstracts
- [ONLINE] DOI: https://doi.org/10.1111/j.1439-0507.2012.02204.x
- [ONLINE] View publication in Scopus
A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi
2012 - Published
You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J., Brown, A. J. P.
BMC Research Notes, vol. 5, 258
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/1756-0500-5-258
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3772/1/A_systems_biology_analysis.pdf
Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers
2012 - Published
Brackley, C., Ciandrini, L., Romano, M. C.
Journal of statistical mechanics-Theory and experiment, vol. 2012, no. 3, P03002
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1088/1742-5468/2012/03/P03002
Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles
2012 - Published
Greulich, P., Ciandrini, L., Allen, R., Romano, M. C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 85, no. 1, 011142
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.85.011142
The dynamics of supply and demand in mRNA translation
2011 - Published
Brackley, C. A., Romano, M. C., Thiel, M.
PLoS Computational Biology , vol. 7, no. 10, e1002203
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pcbi.1002203
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3678/1/The_dynamics.pdf
Inferring direct coupling by means of recurrences
2011 - Published
Zou, Y., Romano, M. C., Thiel, M., Marwan, N., Kurths, J.
International Journal of Bifurcation and Chaos, vol. 21, no. 4, pp. 1099-1111
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1142/S0218127411029033
Analysing GCN4 Translational Control in Yeast by Stochastic Chemical Kinetics Modelling and Simulation
2011 - Published
You, T., Stansfield, I., Romano, M. C., Brown, A. J. P., Coghill, G. M.
BMC Systems Biology, vol. 5, pp. 131
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/1752-0509-5-131
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2299/1/You_et_al_Analysing_GCN4_translational_control_2011.pdf
Introduction to Focus Issue: Dynamics in Systems Biology
2010 - Published
Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C., Thiel, M.
Chaos, vol. 20, no. 4, 045101
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1063/1.3530126
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2527/1/Chaos_IntroductionToFocusIssue2010.pdf
Slow sites in an exclusion process with limited resources
2010 - Published
Brackley, C. A., Romano, M. C., Thiel, M.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 5 Pt 1, 051920
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.82.051920
Limited resources in a driven diffusion process
2010 - Published
Brackley, C. A., Romano, M. C., Grebogi, C., Thiel, M.
Physical Review Letters, vol. 105, no. 7, 078102
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.105.078102
Nonlinear Dynamics and Chaos: Advances and Perspectives
2010 - Published
Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.), de Moura, A. P. S. (ed.)
Springer Verlag, Dordrecht, Netherlands. 293 pages
Books and Reports: Books
- [ONLINE] DOI: https://doi.org/10.1007/978-3-642-04629-2
Fetal maternal heart rate entrainment under controlled maternal breathing
2010 - Published
Van Leeuwen, P., Geue, D., Thiel, M., Lange, S., Cysarz, D., Romano, M. C., Kurths, J., Grönemeyer, D. H.
Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
- [ONLINE] DOI: https://doi.org/10.1007/978-3-642-12197-5_60
- [ONLINE] View publication in Scopus
Role of the particle’s stepping cycle in an asymmetric exclusion process: a model of mRNA translation
2010 - Published
Ciandrini, L., Stansfield, I., Romano, M. C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 81, no. 5, 051904
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.81.051904
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2450/1/Ciandrini_PRE10.pdf
An automated algorithm for the generation of dynamically reconstructed trajectories
2010 - Published
Komalapriya, C., Romano, M. C., Thiel, M., Marwan, N., Kurths, J., Kiss, I. Z., Hudson, J. L.
Chaos, vol. 20, no. 1, 013107
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1063/1.3279680
Distinguishing Direct from Indirect Interactions in Oscillatory Networks with Multiple Time Scales
2010 - Published
Nawrath, J., Romano, M. C., Thiel, M., Kiss, I. Z., Wickramasinghe, M., Timmer, J., Kurths, J., Schelter, B.
Physical Review Letters, vol. 104, no. 3, 038701
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.104.038701
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2449/1/Nawrath_PRL10.pdf
Influence of paced maternal breathing on fetal–maternal heart rate coordination
2009 - Published
Van Leeuwen, P., Geue, D., Thiel, M., Cysarz, D., Lange, S., Romano, M. C., Wessel, N., Kurths, J., Groenemeyer, D. H.
PNAS, vol. 106, no. 33, pp. 13661-13666
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1073/pnas.0901049106
Queueing phase transition: Theory of Translation
2009 - Published
Romano, M. C., Thiel, M., Stansfield, I., Grebogi, C.
Physical Review Letters, vol. 102, no. 19, 198104
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.102.198104
Hypothesis test for synchronization: Twin surrogates revisited
2009 - Published
Romano, M. C., Thiel, M., Kurths, J., Mergenthaler, K., Engbert, R.
Chaos, vol. 19, no. 1, 015108
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1063/1.3072784
Analysis of high-resolution microelectrode EEG recordings in an animal model of spontaneous limbic seizures
2009 - Published
Komalapriya, C., Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Simonotto, J., Furman, M., Ditto, W. L., Carney, P. R.
International Journal of Bifurcation and Chaos, vol. 19, no. 2, pp. 605–617
Contributions to Journals: Articles
- [ONLINE] http://www.worldscientific.com/doi/abs/10.1142/S0218127409023226
- [ONLINE] DOI: https://doi.org/10.1142/S0218127409023226
Dynamically Reconstructed Trajectories
2009 - Published
Komalapriya, C., Thiel, M., Romano, M. C., Kurths, J.
Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
Reconstruction of a system's dynamics from short trajectories
2008 - Published
Komalapriya, C., Thiel, M., Romano, M. C., Marwan, N., Schwarz, U., Kurths, J.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 6, 066217
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.066217
Chaos and nonlinear dynamics: Advances and perspectives
2008 - Published
Karolyi, G., de Moura, A., Romano, M. C., Thiel, M., Kurths, J.
The European Physical Journal. Special Topics, vol. 165, no. 1, pp. 1-4
Contributions to Journals: Editorials
- [ONLINE] DOI: https://doi.org/10.1140/epjst/e2008-00843-3
Continuous wavelet transform in the analysis of burst synchronization in a coupled laser system
2008 - Published
Bergner, A., Meucci, R., Al Naimee, K., Romano, M. C., Thiel, M., Kurths, J., Arecchi, F. T.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 1, 016211
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.016211
Generating surrogates from recurrences
2008 - Published
Thiel, M., Romano, M. C., Kurths, J., Rolfs, M., Kliegl, R.
Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences, vol. 366, no. 1865, pp. 545-557
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1098/rsta.2007.2109

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Teaching Responsibilities

What determines sub-diffusive behavior in crowded protein solutions?

ExpressInHost: A codon tuning tool for the expression of recombinant proteins in host microorganisms

Two-species totally asymmetric simple exclusion process model: From a simple description to intermittency and traveling traffic jams

The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels

Translational control of gene expression via interacting feedback loops

Definition Of The Minimal Contents For The Molecular Simulation Of The Yeast Cytoplasm

Power series solution of the inhomogeneous exclusion process

Deciphering mRNA Sequence Determinants of Protein Production Rate

Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile

Synthetic biology routes to bio-artificial intelligence

Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

Minimal model of transcriptional elongation processes with pauses

Ribosome recycling induces optimal translation rate at low ribosomal availability

Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective

Identifying coupling directions by recurrences

Controlling translation elongation efficiency: tRNA regulation of ribosome flux on the mRNA

Dominant-negative release factors and their effect on termination and translational recoding events

The wiper model: avalanche dynamics in an exclusion process

From START to FINISH: the influence of osmotic stress on the cell cycle

Dominant-negative release factors and their effect on termination and translational recoding events

Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation

A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

Transport on a lattice with dynamical defects

Combinatorial stresses kill pathogenic Candida species

A max-plus model of ribosome dynamics during mRNA translation

Impact of combinatorial stresses upon Candida albicans

A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers

Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles

The dynamics of supply and demand in mRNA translation

Inferring direct coupling by means of recurrences

Analysing GCN4 Translational Control in Yeast by Stochastic Chemical Kinetics Modelling and Simulation

Introduction to Focus Issue: Dynamics in Systems Biology

Slow sites in an exclusion process with limited resources

Limited resources in a driven diffusion process

Nonlinear Dynamics and Chaos: Advances and Perspectives

Fetal maternal heart rate entrainment under controlled maternal breathing

Role of the particle’s stepping cycle in an asymmetric exclusion process: a model of mRNA translation

An automated algorithm for the generation of dynamically reconstructed trajectories

Distinguishing Direct from Indirect Interactions in Oscillatory Networks with Multiple Time Scales

Influence of paced maternal breathing on fetal–maternal heart rate coordination

Queueing phase transition: Theory of Translation

Hypothesis test for synchronization: Twin surrogates revisited

Analysis of high-resolution microelectrode EEG recordings in an animal model of spontaneous limbic seizures

Dynamically Reconstructed Trajectories

Reconstruction of a system's dynamics from short trajectories

Chaos and nonlinear dynamics: Advances and perspectives

Continuous wavelet transform in the analysis of burst synchronization in a coupled laser system

Generating surrogates from recurrences

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