Professor James Prosser
Emeritus Professor
- About
-
- Email Address
- j.prosser@abdn.ac.uk
- School/Department
- School of Biological Sciences
External Memberships
The Microbiology Society
The Society for Applied Microbiology (Honorary Membership)
The American Society for Microbiology
The American Academy of Microbiology
The International Society for Microbial Ecology
The Royal Society of Edinburgh
The Royal Society of Biology
The Royal Society
Latest Publications
Nitrosotalea devaniterrae gen. nov., sp. nov., and Nitrosotalea sinensis sp. nov., two acidophilic ammonia oxidising archaea isolated from acidic soil, and proposal of the new order Nitrosotaleales ord. nov. within the class Nitrososphaeria of the phylum Nitrososphaerota
International Journal of Systematic and Evolutionary Microbiology, vol. 74, no. 9Contributions to Journals: ArticlesNiche breadth specialisation impacts ecological and evolutionary adaptation following environmental change
The ISME Journal, wrae183Contributions to Journals: ArticlesHow and why in microbial ecology: an appeal for scientific aims, questions, hypotheses and theories
Environmental Microbiology, vol. 24, no. 11, pp. 4973-4980Contributions to Journals: Comments and DebatesChronic environmental perturbation influences microbial community assembly patterns
Environmental Science & Technology, vol. 56, no. 4, pp. 2300-2311Contributions to Journals: ArticlesRevisiting plant biological nitrification inhibition efficiency using multiple archaeal and bacterial ammonia-oxidising cultures
Biology and Fertility of Soils, vol. 58, pp. 241-249Contributions to Journals: Articles
Prizes and Awards
1994 Election as Fellow of the American Academy of Microbiology.
2005 Election as Fellow of the Royal Society of Edinburgh
2007 Francis Clark Distinguished Lecture in Soil Biology, Soil Science Society of America
2010 Russell Lecture, Rothamsted Experimental Station
2011-13 Leverhulme Trust Research Fellow
2012 Election as Fellow of the Royal Society of Biology
2013 OBE for Services to Environmental Science
2013 Visiting Fellow, St Edmund Hall, Oxford
2013 Honorary Membership of the Society for Applied Microbiology
2014 Society for Applied Microbiology Environmental Microbiology Lecture
2016 Election as Fellow of the Royal Society
2017 Honorary Life Membership of the Society for Applied Microbiology
2017 Honorary Degree Doctor Honoris Causa of the University of Ljubljana
2018 West Riding Lecture in Microbiology, University of Sheffield
2018 Dean’s Lecture in Agriculture, University of Melbourne
2019 Chuck and Sue Rice International Agronomy Lecture, Kansas State University
2019 Chinese Academy of Sciences Distinguished International Professor
2019 Marine Environmental Science, Zhengzhong Distinguished Visiting Fellowship, University of Xiamen
- Publications
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Page 1 of 3 Results 1 to 100 of 297
Nitrosotalea devaniterrae gen. nov., sp. nov., and Nitrosotalea sinensis sp. nov., two acidophilic ammonia oxidising archaea isolated from acidic soil, and proposal of the new order Nitrosotaleales ord. nov. within the class Nitrososphaeria of the phylum Nitrososphaerota
International Journal of Systematic and Evolutionary Microbiology, vol. 74, no. 9Contributions to Journals: ArticlesNiche breadth specialisation impacts ecological and evolutionary adaptation following environmental change
The ISME Journal, wrae183Contributions to Journals: ArticlesHow and why in microbial ecology: an appeal for scientific aims, questions, hypotheses and theories
Environmental Microbiology, vol. 24, no. 11, pp. 4973-4980Contributions to Journals: Comments and DebatesChronic environmental perturbation influences microbial community assembly patterns
Environmental Science & Technology, vol. 56, no. 4, pp. 2300-2311Contributions to Journals: ArticlesRevisiting plant biological nitrification inhibition efficiency using multiple archaeal and bacterial ammonia-oxidising cultures
Biology and Fertility of Soils, vol. 58, pp. 241-249Contributions to Journals: ArticlesPreferential temperature and ammonia concentration for in-situ growth of Candidatus Nіtrоѕосоѕmісuѕ ammonia oxidising archaea
Soil Biology and Biochemistry, vol. 162, 108405Contributions to Journals: ArticlesTowards meaningful scales in ecosystem microbiome research
Environmental Microbiology, vol. 23, no. 1, pp. 1-4Contributions to Journals: ArticlesExperimental testing of hypotheses for temperature- and pH-based niche specialization of ammonia oxidizing archaea and bacteria
Environmental Microbiology, vol. 22, no. 9, pp. 4032-4045Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/1462-2920.15192
- [ONLINE] View publication in Scopus
Oxygen preference of deeply-rooted mesophilic thaumarchaeota in forest soil
Soil Biology and Biochemistry, vol. 148, 107848Contributions to Journals: ArticlesDifferential Ecosystem Function Stability of Ammonia-Oxidizing Archaea and Bacteria following Short-Term Environmental Perturbation
mSystems, vol. 5, no. 3, pp. 1-14Contributions to Journals: ArticlesConceptual challenges in microbial community ecology
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 375, no. 1798, 20190241Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1098/rstb.2019.0241
- [ONLINE] View publication in Scopus
Putting science back into microbial ecology: a question of approach
Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 375, no. 1798, pp. 20190240Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1098/rstb.2019.0240
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/14143/1/Prosser_PhiTransB_AAM.pdf
- [ONLINE] View publication in Scopus
Selective inhibition of ammonia oxidising archaea by simvastatin stimulates growth of ammonia oxidising bacteria
Soil Biology and Biochemistry, vol. 141, 107673Contributions to Journals: ArticlesNitrous oxide production by ammonia oxidizers: Physiological diversity, niche differentiation and potential mitigation strategies
Global Change Biology, vol. 26, no. 1, pp. 103-118Contributions to Journals: Review articles- [ONLINE] DOI: https://doi.org/10.1111/gcb.14877
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/15422/1/Prosser_GlobalChangeBiology_AAM.pdf
- [ONLINE] View publication in Scopus
The application of high-throughput sequencing technology to analysis of amoA phylogeny and environmental niche specialisation of terrestrial bacterial ammonia-oxidisers
Environmental Microbiome, vol. 14, 3Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/s40793-019-0342-6
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12531/1/The_application_of_high_throughput_sequencing_technology_to_analysis_of_amoA_phylogeny_and_environmental_niche_specialisation_of_terrestrial_bacterial_ammonia_oxidisers.pdf
- [ONLINE] View publication in Scopus
- [ONLINE] https://environmentalmicrobiome.biomedcentral.com/articles/10.1186/s40793-019-0342-6
- [ONLINE] View publication in Mendeley
Genome Sequence of “Candidatus Nitrosocosmicus franklandus” C13, a Terrestrial Ammonia-Oxidizing Archaeon
Microbiology Resource Announcements, vol. 8, no. 40, e00435-19Contributions to Journals: ArticlesDifferential sensitivity of ammonia oxidising archaea and bacteria to matric and osmotic potential
Soil Biology and Biochemistry, vol. 129, pp. 184-190Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2018.11.017
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/13276/1/Bello_et_al_accepted.pdf
- [ONLINE] View publication in Scopus
Approaches to understanding the ecology and evolution of understudied terrestrial archaeal ammonia-oxidisers
Emerging Topics in Life Sciences , vol. 2, no. 4, pp. 619-328Contributions to Journals: ArticlesSoil bacterial networks are less stable under drought than fungal networks
Nature Communications, vol. 9, 3033Contributions to Journals: ArticlesPhysiological models in microbiology: Volume II
CRC Press. 159 pagesBooks and Reports: Books- [ONLINE] DOI: https://doi.org/10.1201/9781351075640
- [ONLINE] View publication in Scopus
The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions
The ISME Journal, vol. 12, pp. 1084-1093Contributions to Journals: ArticlesAmmonia-oxidising archaea living at low pH: Insights from comparative genomics
Environmental Microbiology, vol. 19, no. 12, pp. 4939-4952Contributions to Journals: ArticlesArchaea produce lower yields of N2O than bacteria during aerobic ammonia oxidation in soil
Environmental Microbiology, vol. 19, no. 12, pp. 4829-4837Contributions to Journals: ArticlesKinetics of NH3-oxidation, NO-turnover, N2O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers
Environmental Microbiology, vol. 19, no. 12, pp. 4882-4896Contributions to Journals: ArticlesAbiotic Conversion of Extracellular NH2OH Contributes to N2O Emission during Ammonia Oxidation
Environmental Science & Technology, vol. 51, no. 22, pp. 13122–13132Contributions to Journals: ArticlesLinks between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity
FEMS Microbiology Ecology, vol. 93, no. 11, pp. 1-13Contributions to Journals: ArticlesAmmonia oxidisers in a non-nitrifying Brazilian savanna soil
FEMS Microbiology Ecology, vol. 93, no. 11, fix122Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/femsec/fix122
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11145/1/Catao_et_al_20_08_17.pdf
Spotlight on… Jim Prosser
FEMS Microbiology Letters, vol. 18, no. 2, fnx183Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/femsle/fnx183
Chemotaxonomic characterisation of the thaumarchaeal lipidome
Environmental Microbiology, vol. 19, no. 7, pp. 2681-2700Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/1462-2920.13759
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/10467/1/Chemotaxonomic_characterization_of_the_thaumarchaeal_lipidome.pdf
- [ONLINE] http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000405907300014&KeyUID=WOS:000405907300014
Editorial: FEMS Letters: investing in science for 40 years
FEMS Microbiology Letters, vol. 364, no. 10, fnx095Contributions to Journals: EditorialsAdvances in the study of the microbiome
Microbiology Today, vol. 44, no. 2, pp. 95-96Contributions to Journals: Comments and DebatesTemperature responses of soil ammonia-oxidising archaea depend on pH
Soil Biology and Biochemistry, vol. 106, pp. 61-68Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2016.12.007
- [ONLINE] View publication in Scopus
The Role of Microbial Community Composition in Controlling Soil Respiration Responses to Temperature
PloS ONE, vol. 11, no. 10, e0165448Contributions to Journals: ArticlesCandidatus Nitrosotalea
Bergey’s Manual of Systematics of Archaea and Bacteria. Whitman, P. W. B. (ed.). Wiley-BlackwellChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1002/9781118960608.gbm01292
Candidatus Nitrosotaleaceae
Bergey’s Manual of Systematics of Archaea and Bacteria. Whitman, P. W. B. (ed.). Wiley-BlackwellChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1002/9781118960608.fbm00264
Candidatus Nitrosotaleales
Bergey’s Manual of Systematics of Archaea and Bacteria. Whitman, P. W. B. (ed.). Wiley-BlackwellChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1002/9781118960608.obm00123
Ecology of Archaea
Oxford Bibliographies in Ecology. Gibson, D. (ed.). New York: Oxford University Press.Chapters in Books, Reports and Conference Proceedings: Other Contributions- [ONLINE] DOI: https://doi.org/10.1093/OBO/9780199830060-0160
Stream drying drives microbial ammonia oxidation and first-flush nitrate export
Ecology, vol. 97, no. 9, pp. 2192-2198Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1002/ecy.1486
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/6284/1/Merbt_et_al._2c_2016_2c_Ecology.pdf
A timely reminder of technical limitations
Microbial Biotechnology, vol. 9, no. 4, pp. 435Contributions to Journals: ArticlesPlant nitrogen-use strategy as a driver of rhizosphere archaeal and bacterial ammonia oxidiser abundance
FEMS Microbiology Ecology, vol. 92, no. 7, fiw091Contributions to Journals: ArticlesIdentifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”
Applied and Environmental Microbiology, vol. 82, no. 9, pp. 2608-2619Contributions to Journals: ArticlesIsolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration
FEMS Microbiology Ecology, vol. 92, no. 5, pp. 1-10Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/femsec/fiw057
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/6131/1/fiw057.full.pdf
Short-term impact of soybean management on ammonia oxidizers in a Brazilian savanna under restoration as revealed by coupling different techniques
Biology and Fertility of Soils, vol. 52, no. 3, pp. 401-412Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1007/s00374-015-1086-0
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8036/1/BFSO_D_15_00573_R2.pdf
- [ONLINE] View publication in Scopus
Microbes as engines of ecosystem function: When does community structure enhance predictions of ecosystem processes?
Frontiers in Microbiology, vol. 7, pp. 1-10Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.3389/fmicb.2016.00214
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/6096/1/fmicb_07_00214.pdf
- [ONLINE] View publication in Scopus
Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota
The ISME Journal, vol. 10, no. 1, pp. 85-96Contributions to Journals: ArticlesCoupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota
PNAS, vol. 112, no. 30, pp. 9370-9375Contributions to Journals: ArticlesDispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
Nature Reviews Microbiology, vol. 13, no. 7, pp. 439-446Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1038/nrmicro3468
pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils
Microbial Ecology, vol. 69, no. 4, pp. 879-883Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1007/s00248-014-0548-5
Ammonia oxidation is not required for growth of Group 1.1c soil Thaumarchaeota
FEMS Microbiology Ecology, vol. 91, no. 3, fiv001Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/femsec/fiv001
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/4385/1/Amonia_oxidation.pdf
Differential response of non-adapted ammonia oxidising archaea and bacteria to drying rewetting stress
FEMS Microbiology Ecology, vol. 90, no. 2, pp. 380-389Contributions to Journals: ArticlesThe Family Nitrosomonadaceae
The Prokaryotes: Alphaproteobacteria and Betaproteobacteria. Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., Thompson, F. (eds.). 4 edition. Springer Berlin / Heidelberg, pp. 901-918, 18 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1007/978-3-642-30197-1_372
- [ONLINE] View publication in Scopus
Temperature sensitivity of soil respiration rates enhanced by microbial community response
Nature, vol. 513, no. 7516, pp. 81-84Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/nature13604
Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds
FEMS Microbiology Ecology, vol. 89, no. 3, pp. 542-552Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/1574-6941.12353
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3738/1/fem12353.pdf
Most influential FEMS publications
FEMS Microbiology Letters, vol. 354, no. 2, pp. 83-84Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1111/1574-6968.12444
Effect of nitrification inhibitors on the growth and activity of Nitrosotalea devanaterra in culture and soil
Soil Biology and Biochemistry, vol. 62, pp. 129-133Contributions to Journals: ArticlesActivity of the ammonia oxidising bacteria is responsible for zinc tolerance development of the ammonia oxidising community in soil: a stable isotope probing study
Soil Biology and Biochemistry, vol. 58, pp. 244-247Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2012.12.003
Think before you sequence
Nature, vol. 494, no. 7435, pp. 41-41Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/494040a
Temporal and depth-related differences in prokaryotic communities in abyssal sediments associated with particulate organic carbon flux
Deep Sea Research Part I: Oceanographic Research Papers, vol. 70, pp. 26-35Contributions to Journals: ArticlesArchaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation
Trends in Microbiology, vol. 20, no. 11, pp. 523-531Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1016/j.tim.2012.08.001
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/5640/1/Archeal.pdf
Differential effects of microorganism-invertebrate interactions on benthic nitrogen cycling
FEMS Microbiology Ecology, vol. 82, no. 1, pp. 11-22Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2012.01400.x
Ecosystem processes and interactions in a morass of diversity
FEMS Microbiology Ecology, vol. 81, no. 3, pp. 507-519Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2012.01435.x
Role of functionally dominant species in varying environmental regimes: evidence for the performance-enhancing effect of biodiversity
BMC Ecology, vol. 12, 14Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/1472-6785-12-14
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3689/1/Role_of_functionally.pdf
Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen
FEMS Microbiology Ecology, vol. 80, no. 1, pp. 114-123Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2011.01275.x
Differential photoinhibition of bacterial and archaeal ammonia oxidation
FEMS Microbiology Letters, vol. 327, no. 1, pp. 41-46Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6968.2011.02457.x
Niche specialization of terrestrial archaeal ammonia oxidizers
PNAS, vol. 108, no. 52, pp. 21206-21211Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1073/pnas.1109000108
Establishment of normal gut microbiota is compromised under excessive hygiene conditions
PloS ONE, vol. 6, no. 12, e28284Contributions to Journals: ArticlesEffect of arbuscular mycorrhizal colonisation on the growth and phosphorus nutrition of Populus euramericana c.v. Ghoy
Biomass & Bioenergy, vol. 35, no. 11, pp. 4605-4612Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.biombioe.2011.08.015
Ecology and metagenomics of soil microorganisms
FEMS Microbiology Ecology, vol. 78, no. 1, pp. 1-2Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2011.01184.x
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
PNAS, vol. 108, no. 38, pp. 15892-15897Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1073/pnas.1107196108
Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils
Applied and Environmental Microbiology, vol. 77, no. 13, pp. 4618-4625Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1128/AEM.00136-11
Use of Different PCR Primer-Based Strategies for Characterization of Natural Microbial Communities
Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. John Wiley and Sons, pp. 41-47, 7 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1002/9781118010518.ch5
- [ONLINE] View publication in Scopus
Editorial - From the Chief Editor and the former Chief Editor
FEMS Microbiology Ecology, vol. 75, no. 1, pp. 1Contributions to Journals: Editorials- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2010.01019.x
- [ONLINE] View publication in Scopus
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms
The ISME Journal, vol. 5, no. 6, pp. 1067-1071Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/ismej.2010.191
Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil
Research on Nitrification and Related Processes, Part B. Klotz, M. G., Stein, L. Y. (eds.). Elsevier Academic Press, pp. 3-34, 32 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1016/B978-0-12-386489-5.00001-4
The impact of zero-valent iron nanoparticles on a river water bacterial community
Journal of Hazardous Materials, vol. 184, no. 1-3, pp. 73-80Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.jhazmat.2010.08.006
Archaea rather than bacteria control nitrification in two agricultural acidic soils
FEMS Microbiology Ecology, vol. 74, no. 3, pp. 566-574Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2010.00971.x
Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile
FEMS Microbiology Ecology, vol. 74, no. 2, pp. 302-315Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2010.00961.x
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment
Applied and Environmental Microbiology, vol. 76, no. 22, pp. 7626-7634Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1128/AEM.00595-10
Autotrophic ammonia oxidation by soil thaumarchaea
PNAS, vol. 107, no. 40, pp. 17240-17245Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1073/pnas.1004947107
Degradation of metalaxyl-M in contrasting soils is influenced more by differences in physicochemical characteristics than in microbial community composition after re-inoculation of sterilised soils
Soil Biology and Biochemistry, vol. 42, no. 7, pp. 1123-1131Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2010.03.016
Links between methane flux and transcriptional activities of methanogens and methane oxidizers in a blanket peat bog
FEMS Microbiology Ecology, vol. 73, no. 1, pp. 157-165Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2010.00871.x
Replicate or lie
Environmental Microbiology, vol. 12, no. 7, pp. 1806-1810Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1462-2920.2010.02201.x
The ecological coherence of high bacterial taxonomic ranks
Nature Reviews Microbiology, vol. 8, no. 7, pp. 523-529Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/nrmicro2367
Bacterial biodiversity-ecosystem functioning relations are modified by environmental complexity
PloS ONE, vol. 5, no. 5, e10834Contributions to Journals: ArticlesStable isotope probing analysis of interactions between ammonia oxidizers
Applied and Environmental Microbiology, vol. 76, no. 8, pp. 2468-2477Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1128/AEM.01964-09
Nucleic-acid-based characterisation of community structure and function
Environmental molecular microbiology. Liu, W., Jansson, J. K. (eds.). Caister Academic Press, pp. 63-86, 24 pagesChapters in Books, Reports and Conference Proceedings: ChaptersSoil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota
FEMS Microbiology Ecology, vol. 70, no. 3, pp. 367-376Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2009.00748.x
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces
BMC Biology, vol. 7, 79Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/1741-7007-7-79
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3681/1/BMC%2520Biology%25207-79.pdf
Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest
FEMS Microbiology Ecology, vol. 70, no. 2, pp. 208-217Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2009.00775.x
Correlation of methane production and functional gene transcriptional activity in a peat soil
Applied and Environmental Microbiology, vol. 75, no. 21, pp. 6679-6687Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1128/AEM.01021-09
Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies
Soil Biology and Biochemistry, vol. 41, no. 11, pp. 2292-2298Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2009.08.010
Showcasing microbial ecology research in China
FEMS Microbiology Ecology, vol. 70, no. 2, pp. 163-164Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2009.00781.x
Functional principal component data analysis: a new method for analysing microbial community fingerprints
Journal of Microbiological Methods, vol. 79, no. 1, pp. 89-95Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.mimet.2009.08.010
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
FEMS Microbiology Ecology, vol. 70, no. 1, pp. 99-108Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2009.00725.x
Abundance and community structure of sulfate reducing prokaryotes in a paddy soil of southern China under different fertilization regimes
Soil Biology and Biochemistry, vol. 41, no. 4, pp. 687-694Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2009.01.001
Influence of repeated prescribed burning on incorporation of C-13 from cellulose by forest soil fungi as determined by RNA stable isotope probing
Soil Biology and Biochemistry, vol. 41, no. 3, pp. 467-472Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.soilbio.2008.11.018
Gut microbiology: the black box and beyond
FEMS Microbiology Ecology, vol. 66, no. 3, pp. 485-486Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1574-6941.2008.00607.x
Plant host habitat and root exudates shape soil bacterial community structure
The ISME Journal, vol. 2, no. 12, pp. 1221-1230Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/ismej.2008.80
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
Environmental Microbiology, vol. 10, no. 11, pp. 2931-2941Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1462-2920.2008.01775.x
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
Environmental Microbiology, vol. 10, no. 11, pp. 2966-2978Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1462-2920.2008.01701.x
