Senior Lecturer
- About
-
- Email Address
- c.s.jones@abdn.ac.uk
- Telephone Number
- +44 (0)1224 272403
- School/Department
- School of Biological Sciences
Latest Publications
Genome analysis reveals three distinct lineages of the cosmopolitan white shark
Current Biology, vol. 34, no. 15, pp. 3582-3590.e4Contributions to Journals: ArticlesEstimating fishing effort and LPUE for the Scottish Brown Crab (Cancer pagurus) trap fishery using VMS and observer data
Fisheries Research, vol. 274, 106974Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.fishres.2024.106974
Mitochondrial haplotypes reveal low diversity and restricted connectivity in the critically endangered batoid population of a Marine Protected Area
Marine Ecology Progress Series, vol. 731, pp. 279-291Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.3354/meps14242
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/20207/1/m14242_advview.pdf
Characteristics of the spiny dogfish (Squalus acanthias) nuclear genome
G3: Genes, Genomes, Genetics Mission, vol. 13, no. 9, jkad146Contributions to Journals: ArticlesFeeding ecology of broadbill swordfish (Xiphias gladius) in the California current
PloS ONE, vol. 18, no. 2, e0258011Contributions to Journals: Articles
- Research
-
Research Overview
My research focuses on the application of molecular genetics and genomics to the ecology and conservation of endangered species. As molecular ecologists we use molecular data in elusive marine species to assist conservation management questions, particularly in top predators, the elasmobranchs. Yet the biology of long-lived and enigmatic ‘flagship’ species such as the Great white, basking shark and Flapper skate are surprisingly poorly understood. We seek to comprehend how genetic diversity evolves in these small, highly vagile populations, the role that local adaptation plays and its consequence for conservation biology and management, along with the impacts of renewable energy facilities. We utilize methods such as DNA profiling (genetic tagging) through to next generation sequencing, integrating these data with seascape analyses (GIS) in an effort to provide comprehensive information for biodiversity management and conservation, such as implementation of Marine Protected Areas (MPAs).
Additionally I seek to understand the invasive nature of several Arionid slugs, vectors of many plant diseases, which is of fundamental importance for national and international crop security. Similarly understanding the evolution of host-parasite interactions in several aquatic systems (including the medically important freshwater snail intermediate host of trematodes, Biomphalaria glabrata and the ectoparasitism in commercially important Atlantic salmon by sealice or the monogenean, Gyrodactylus salaris) is of fundamental importance.
Funding and Grants
Recent grants:
2020-2024. Sea Our Seas Foundation (SOSF) Biennial Keystone grant award: ‘Genetic monitoring tool for North-East Atlantic Elasmobranchs to assist conservation and management’. https://saveourseas.com/project/a-genetic-tool-to-help-monitor-sharks-and-skates-in-the-north-east-atlantic/
2018-2023. Nature.Scot ‘Assessing MPA efficacy and adaptive management of the common skate’. (with Peter Wright, Marine Scotland & David Donnan Nature.Scot)
2017-2019. Scottish Universities Life Sciences Alliance (SULSA) EU Partnership Building (PEER) co-PI, ‘International Marine Connectivity Network’, co-PI Oscar Gaggiotti (St. Andrews).
2016-2018. NERC Biomolecular Analysis Facility (NBAF) NBAF965 ‘Genetic structure and connectivity in the endangered yet potentially commercially valuable North Atlantic porbeagle shark: informing conservation and towards sustainable fisheries management.’
2013-2017. Scottish Natural Heritage (SNH). ‘Genetic monitoring of the basking shark, Cetorhinus maximus in Scottish waters to address environmental impacts; effective population size, population connectivity and group kinship’.
2015-2016. NERC Biomolecular Analysis Facility (NBAF) NBAF942 'Genetic monitoring to assess the potential for anthropogenic impacts in the endangered common skate in the north east Atlantic: genetic diversity, connectivity and effective population size'.
2014-2016. NERC Biomolecular Analysis Facility (NBAF) NBAF765 ‘Stock structure, residency and kinship of white shark aggregations along the South African coast.’
2014-2015. NERC Biomolecular Analysis Facility (NBAF) NBAF764 ‘Baseline data for assessing environmental impacts on basking sharks in Scottish waters: effective population size, connectivity and group kinship.'
2013-2015. NERC Biomolecular Analysis Facility (NBAF) NBAF723 'Population structure, kinship and the demographic history of the basking shark, Cetorhinus maximus'.
- Publications
-
Page 2 of 2 Results 51 to 89 of 89
Isolation of a novel fish thymidylate kinase gene, upregulated in Atlantic salmon (Salmo salar L.) following infection with the monogenean parasite Gyrodactylus salaris
Fish & Shellfish Immunology, vol. 23, no. 4, pp. 793-807Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.fsi.2007.03.001
The genetical architecture of outbreeding depression in Atlantic salmon
Journal of Fish Biology, vol. 69, pp. 240Contributions to Journals: ArticlesA High incidence of clustered microsatellite mutations revealed by parent-offpring analysis in an African freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata).
Genetica, vol. 124, pp. 77-83Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1007/s10709-005-0204-6
High levels of selfing are revealed by a parent-offspring analysis of the medically-important freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata).
Journal of Molluscan Studies, vol. 71, pp. 175-180Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/mollus/eyi020
Breeding system and demography shape population genetic structure across ecological and climatic zones in the African freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata), intermediate host for schistosomes
Molecular Ecology, vol. 13, no. 11, pp. 3561-3573Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/J.1365-294X.2004.02339.X
Polymorphic dinucleotide microsatellite loci in the clonal ascidian Diplosoma listerianum: predominance of compound and highly interrupted imperfect repeats.
Molecular Ecology Notes, vol. 4, no. 2, pp. 283-285Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1471-8286.2004.00643.x
Schistosoma mansoni: Resistant specific infection-induced gene expression in Biomphalaria glabrata identified by fluorescent-based differential display
Experimental Parasitology, vol. 107, no. 1-2, pp. 97-104Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.exppara.2004.04.004
Trematodes and snails: an intimate association
Canadian Journal Of Zoology/Revue Canadien De Zoologie, vol. 82, no. 2, pp. 251-269Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1139/z03-215
Microsatellites in the freshwater snail Bulinus globosus (Gastropoda : Planorbidae) from Zanzibar
Molecular Ecology Notes, vol. 3, no. 1, pp. 108-110Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1046/j.1471-8286.2003.00368.x
Molluscs, molecules and man: Towards new perspectives in Host-parasite interactions and future control strategies
Other Contributions: Other ContributionsThe expression of immune-regulatory genes in rainbow trout, Oncorhynchus mykiss, during a natural outbreak of proliferative kidney disease (PKD)
Parasitology, vol. 126, pp. S95-102Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1017/S0031182003003767
Conservation of a dinucleotide simple sequence repeat locus in sharks
Molecular Phylogenetics and Evolution, vol. 23, no. 2, pp. 205-213Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/S1055-7903(02)00001-5
Towards selective breeding of Atlantic salmon for sea louse resistance: approaches to identify trait markers
Pest Management Science, vol. 58, pp. 559-568Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1002/ps.511
Molecular approaches in the study of Biomphalaria glabrata - Schistosoma mansoni interactions: linkage analysis and gene expression profiling
Parasitology, vol. 123, no. 07, pp. 181-196Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1017/S0031182001008174
Sex-biased dispersal of great white sharks
Nature, vol. 412, pp. 139-140Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/35084125
Isolation and characterisation of a putative interleukin 13 receptor a2 sequence from rainbow trout (Oncorhynchus mykiss)
Fish & Shellfish Immunology, vol. 11, pp. 541-546Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1006/fsim.2001.0355
Molecular evolution of freshwater snail intermediate hosts within the Bulinus forskalii group
Parasitology, vol. 123, pp. S277-S292Contributions to Journals: ArticlesPolymorphic microsatellites in the African freshwater snail, Bulinus forskalii (Gastropoda, Pulmonata)
Molecular Ecology Notes, vol. 1, pp. 237-241Contributions to Journals: ArticlesSpatio-temporal population genetics of Biomphalaria pfeifferi in the Zimbabwean Highveld using RAPD markers
American Journal of Tropical Medicine and Hygiene, vol. 95, pp. 515-527Contributions to Journals: ArticlesIsolation and characterization of dinucleotide microsatellite loci in the Great White Shark, Carcharodon carcharias
Molecular Ecology, vol. 9, pp. 1176-1178Contributions to Journals: ArticlesMicrosatellite markers for investigating population structure in Octopus vulgaris (Mollusca : Cephalopoda)
Molecular Ecology, vol. 9, pp. 641-642Contributions to Journals: ArticlesMolecular evidence supports an African affinity of the Neotropical freshwater gastropod, Biomphalaria glabrata, Say 1818, an intermediate host for Schistosoma mansoni
Proceedings of the Royal Society of London. B, Biological Sciences, vol. 267, pp. 2351-2358Contributions to Journals: ArticlesUse of differential display to detect changes in gene expression in the intermediate snail host Biomphalaria glabrata upon infection with Schistosoma mansoni
Parasitology, vol. 120, pp. 399-407Contributions to Journals: ArticlesIsolation and characterization of microsatellite loci in the freshwater gastropod, Biomphalaria glabrata, an intermediate host for Schistosoma mansoni
Molecular Ecology, vol. 8, pp. 2149-2151Contributions to Journals: ArticlesMolecular identification of schistosome intermediate hosts: case studies of Bulinus forskalii group species (Gastropoda : Planorbidae) from Central and East Africa
Biological Journal of the Linnean Society, vol. 68, pp. 215-240Contributions to Journals: ArticlesPolymorphic microsatellite loci identified in the highly clonal freshwater bryozoan Cristatella mucedo
Molecular Ecology, vol. 8, pp. 341-342Contributions to Journals: ArticlesMolecular characterisation of intermediate snail hosts and the search for resistance genes
Memorias do Instituto Oswaldo Cruz, vol. 93, pp. 111-116Contributions to Journals: ArticlesSpecies-specific primers discriminate schistosome intermediate hosts: unambiguous PCR diagnosis of Bulinus forskalii group taxa (Gastropoda: Planorbidae)
Molecular Ecology, vol. 6, no. 9, pp. 843-849Contributions to Journals: ArticlesChanges in age composition in populations of the Eurasian otter Lutra lutra in Scotland
Journal of Zoology, vol. 243, no. 4, pp. 853-857Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1111/j.1469-7998.1997.tb01984.x
- [ONLINE] View publication in Scopus
Temporal patterns of clonality and parasitism in a population of freshwater bryozoans
Proceedings of the Royal Society of London. B, Biological Sciences, vol. 263, no. 1375, pp. 1313-1318Contributions to Journals: ArticlesCorrelate of reproductive success within alternative mating tactic of the common shrew
Behavioral Ecology, vol. 7, no. 3, pp. 334-340Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/beheco/7.3.334
- [ONLINE] View publication in Scopus
Female control of paternity in the internally fertilizing compound ascidian Diplosoma listerianum .2. Investigation of male mating success using RAPD markers
Proceedings of the Royal Society of London. B, Biological Sciences, vol. 263, no. 1369, pp. 401-407Contributions to Journals: ArticlesA molecular and ecological investigation of the large arionid slugs of North-West Europe: The potential for new pests
Ecology of Agricultural Pests: Biochemical Approaches. Symondson, W. O. C., Liddell, J. E. (eds.). Springer, pp. 93-131, 39 pagesChapters in Books, Reports and Conference Proceedings: ChaptersNew approaches to the identification of medically important freshwater snails associated with irrigated agriculture in Africa
SLUGS, no. 66, pp. 312Contributions to Journals: ArticlesRANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) MARKERS REVEAL CROSS-FERTILIZATION IN BIOMPHALARIA-GLABRATA (PULMONATA, BASOMMATOPHORA)
Journal of Molluscan Studies, vol. 61, pp. 455-465Contributions to Journals: ArticlesDIFFERENTIAL MALE GENETIC SUCCESS DETERMINES GENE FLOW IN AN EXPERIMENTALLY MANIPULATED MOUSE-POPULATION
Proceedings of the Royal Society of London. B, Biological Sciences, vol. 260, no. 1359, pp. 251-256Contributions to Journals: ArticlesPARENT AND LARVAL RAPD FINGERPRINTS REVEAL OUTCROSSING IN FRESH-WATER BRYOZOANS
Molecular Ecology, vol. 3, no. 3, pp. 193-199Contributions to Journals: ArticlesRANDOMLY AMPLIFIED POLYMORPHIC DNA ANALYSIS OF CLONAL POPULATION-STRUCTURE AND GEOGRAPHIC-VARIATION IN A FRESH-WATER BRYOZOAN
Proceedings of the Royal Society of London. B, Biological Sciences, vol. 253, no. 1337, pp. 147-154Contributions to Journals: ArticlesManagement of a complex diving accident
Undersea Biomedical Research, vol. 6, no. 2, pp. 209-216Contributions to Journals: Articles- [ONLINE] View publication in Scopus