Dr Indrani Mukhopadhya | People | The University of Aberdeen

Dr Indrani Mukhopadhya

BSc (Hons), MSc, PhD, AFHEA

Lecturer

Accepting PhDs

About

Email Address: indrani.mukhopadhya@abdn.ac.uk
Office Address: 6.30 Institute of Medical Sciences
Foresterhill Campus
Ashgrove Road West
AB25 2ZD
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School/Department: School of Medicine, Medical Sciences and Nutrition

ORCiD

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External Memberships

Member of the Microbiology Society

Member of the British Society of Immunology (BSI)

Member of the British Society of Gastroenterology (BSG)

Member of the UK Gut Microbiota for Health Expert Panel

STEM Ambassador

Research

Research Overview

To underpin the role of the gut microbiota in health and disease.
Elucidate host-pathogen interactions, pathogenic mechanisms, and immune response of enteric microbes.
Investigate the mechanism by which gut viruses initiate chronic inflammation in the aetiopathogenesis of inflammatory bowel disease and other gastrointestinal diseases.
Harness the power of gut microbes as novel therapeutic agents.

Research Areas

Accepting PhDs

I am currently accepting PhDs in Biomedical Sciences.

Please get in touch if you would like to discuss your research ideas further.

Email Me

Biomedical Sciences

Accepting PhDs

View Research Area

Research Specialisms

Microbiology
Virology
Immunology
Molecular Biology
Gastroenterology

Our research specialisms are based on the Higher Education Classification of Subjects (HECoS) which is HESA open data, published under the Creative Commons Attribution 4.0 International licence.

Current Research

Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next generation sequencing and culturomics

IBD goes viral - Understanding the causes of Inflammatory Bowel Disease

Knowledge Exchange

Grampian Liver Research Patient Engagement Event -presentation on Gut Microbiota in liver disease, 2024
Podcast on Next generation biotherapeutics 2023 Podcast link
Institute of Medical Sciences, UoA, Doors open day, 2023
University of Aberdeen May fest 2019, Fantastic Microbes and Where to Find Them.
Café MED talk on IBD research aimed at a general audience, June 2018
University of Aberdeen May fest 2017, Man vs Microbes Quiz, aimed to test and enhance public knowledge of microbiology and measures to stay safe from
Filmed for a short video clip describing my ISSF project (2016), which is now hosted on the ISSF@Aberdeen university website and also on the college YouTube channel

Funding and Grants

Laboratory start-up fund from Institute of Medical Sciences, UoA - Nov 2022
Health Protection Scotland grant awarded in Feb 2019 for genotyping of representative rotavirus isolates post introduction of rotavirus vaccine in Scotland – PI
Wellcome Trust ISSF @ Aberdeen fellowship support award, from October 2015 to March 2016, for the project titled “Role of the enteric virome and its interaction with the bacterial and fungal microbiome in the aetiopathogenesis of Crohn’s disease” – PI
Health Protection Scotland grant awarded in March 2015 for genotyping of representative rotavirus isolates post introduction of rotavirus vaccine in Scotland – Co-PI
NHS Grampian Endowment Funding Grant 2014/2015 for the project titled “Elucidating the Role of Non Jejuni/coli-Campylobacter in the Development of Colorectal Cancer Utilising Comparative Genomics to Study their Pathogenetic Potential” – PI

Teaching

Courses

Honours Immunology - Option 1 IM4007
Course coordinator
Microbes, Infection & Immunity BI25M5
Fundamentals Of Immunology IM3501
Applied Immunology - Human Health IM3502
Profiles of Immunology MB5028
Honours Microbiology: Intestinal Microbiology MC4303
Basic Research Methods MT5515
Mechanisms Of Disease And Principles Of Chemotherapy PA3802
Year 1 MBChB Immunology Problem-Solving Tutorial (ME2019)

Teaching Responsibilities

Undertake lectures, workshops, practicals, tutorials and assessments for microbiology and immunology courses at the University.

Non-course Teaching Responsibilities

Supervising BSc Honours and MSc projects
Personal Tutor for UoA students
Placement Tutor for MSci students

Publications

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Butyrate-producing bacteria as probiotic supplement: beneficial effects on metabolism and modulation of behaviour in an obesity mouse model
2024 - E-pub ahead of print
Garcia-Serrano, A., Skoug, C., Axling, U., Korhonen, E., Teixeira, C., Ahrén, I., Mukhopadhya, I., Boteva, N., Martin, J., Scott, K., Gratz, S., Stenkula, K., Holm, C., Duarte, J.
Beneficial Microbes, pp. 1-16
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1163/18762891-bja00040
Butyrate-producing bacteria as probiotic supplement: beneficial effects on metabolism and modulation of behavior in an obesity mouse model
2023 - Published
Garcia-Serrano, A. M., Skoug, C., Axling, U., Korhonen, E. R., Teixeira, C., Ahrén, I. L., Mukhopadhya, I., Boteva, N., Martin, J., Scott, K., Gratz, S., Stenkula, K. G., Holm, C., Duarte, J. M.
Working Papers: Preprint Papers
- [ONLINE] DOI: https://doi.org/10.1101/2023.11.02.564919
Is HBx protein the X factor in the pathogenesis of IBD?
2023 - Published
Mukhopadhya, I.
Gut, vol. 72, no. 10, pp. 1808-1809
Contributions to Journals: Comments and Debates
- [ONLINE] DOI: https://doi.org/10.1136/gutjnl-2023-329666
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/20343/1/Mukhopadhya_G_Is_HNx_Protein_AAM.pdf
Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics
2022 - Published
Mukhopadhya, I., Martin, J. C., Shaw, S., McKinley, A. J., Gratz, S. W., Scott, K. P.
Microbiome, vol. 10, no. 1, 171
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/s40168-022-01354-4
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/19378/1/Mukhopadhya_etal_M_Comparison_Of_Microbial_VoR.pdf
- [ONLINE] View publication in Scopus
Dietary fibre complexity and its influence on functional groups of the human gut microbiota
2021 - Published
Louis, P., Solvang, M., Duncan, S., Walker, A., Mukhopadhya, I.
Proceedings of the Nutrition Society, vol. 80, no. 4, pp. 386–397
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1017/S0029665121003694
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/17337/2/Louis_etal_PNS_Dietary_Fibre_Complexity_VoR.pdf
Oral bacterial diversity is inversely correlated with mucosal inflammation
2020 - Published
Hijazi, K., Morrison, R. W., Mukhopadhya, I., Martin, B., Gemmell, M., Shaw, S., Santoro, F.
Oral Diseases, vol. 26, no. 7, pp. 1566-1575
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/odi.13420
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/15145/1/Hijazi_etal_odi_oralbacteri_a_VOR.pdf
- [ONLINE] View publication in Scopus
In vivo modulation of cervicovaginal drug transporters and tissue distribution by film-released tenofovir and darunavir for topical prevention of HIV-1
2020 - Published
Hijazi, K., Iannelli, F., Cuppone, A. M., Desjardins, D., Caldwell, A., Dereuddre-Bosquet, N., Scala, C., Smith, K. A., Mukhopadhya, I., Frank, B., Gwozdz, G., Santoro, F., Le Grand, R., Pozzi, G., Kelly, C. G.
Molecular Pharmaceutics, vol. 17, no. 3, pp. 852-864
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1021/acs.molpharmaceut.9b01121
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/15775/1/Hijazi_et_al_MP_Invivo_AAM.pdf
- [ONLINE] View publication in Scopus
Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria
2019 - Published
Laverde Gomez, J. A., Mukhopadhya, I., Duncan, S. H., Louis, P., Shaw, S., Collie-Duguid, E., Crost, E., Juge, N., Flint, H. J.
Environmental Microbiology, vol. 21, no. 1, pp. 259-271
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/1462-2920.14454
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11822/1/Gomez_et_al_2019_Environmental_Microbiology.pdf
- [ONLINE] View publication in Mendeley
Comparative genomics and genome biology of Campylobacter showae
2019 - Published
Hsu, T., Gemmell, M. R., Franzosa, E. A., Berry, S. H., Mukhopadhya, I., Hansen, R., Michaud, M., Nielsen, H., Miller, W. G., Nielsen, H., Bajaj-Elliott, M., Huttenhower, C., Garrett, W. S., Hold, G. L.
Emerging Microbes and Infections, vol. 8, no. 1, pp. 827-840
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1080/22221751.2019.1622455
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12367/1/Comparative_genomics_and_genome_biology_of_Campylobacter_showae.pdf
- [ONLINE] https://www.tandfonline.com/doi/full/10.1080/22221751.2019.1622455
- [ONLINE] View publication in Mendeley
The gut virome: the ‘missing link’ between gut bacteria and host immunity?
2019 - Published
Mukhopadhya, I., Segal, J. P., Carding, S. R., Hart, A. L., Hold, G. L.
Therapeutic Advances in Gastroenterology, vol. 12, pp. 1-17
Contributions to Journals: Review articles
- [ONLINE] DOI: https://doi.org/10.1177/1756284819836620
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12207/1/The_Gut_Virome_Accepted_Manuscript.pdf
- [ONLINE] View publication in Scopus
- [ONLINE] View publication in Mendeley
Mechanistic insights into the cross-feeding of Ruminococcus gnavus and Ruminococcus bromii on host and dietary carbohydrates
2018 - Published
Crost, E. H., Le Gall, G., Laverde-Gomez, J. A., Mukhopadhya, I., Flint, H. J., Juge, N.
Frontiers in Microbiology, vol. 9, 2558
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.3389/fmicb.2018.02558
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11480/1/Mechanistic_Insights_Into_the_Cross_Feeding_of_Ruminococcus_gnavus_and_Ruminococcus_bromii_on_Host_and_Dietary_Carbohydrates.pdf
- [ONLINE] View publication in Scopus
- [ONLINE] Supplementary Material
Review article: the gut microbiome in inflammatory bowel disease-avenues for microbial management
2018 - Published
McIlroy, J., Ianiro, G., Mukhopadhya, I., Hansen, R., Hold, G. L.
Alimentary Pharmacology & Therapeutics, vol. 47, no. 1, pp. 26-42
Contributions to Journals: Review articles
- [ONLINE] DOI: https://doi.org/10.1111/apt.14384
Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii
2018 - Published
Mukhopadhya, I., Morais, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A., Flint, H. J.
Environmental Microbiology, vol. 20, pp. 324-336
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/1462-2920.14000
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9896/1/Mukhopadhya_et_al_2018_Environmental_Microbiology.pdf
Comparative genomics of Campylobacter concisus : Analysis of clinical strains reveals genome diversity and pathogenic potential
2018 - Published
Gemmell, M. R., Berry, S., Mukhopadhya, I., Hansen, R., Nielsen, H. L., Bajaj-Elliott, M., Nielsen, H., Hold, G. L.
Emerging Microbes and Infections, vol. 7, 116
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1038/s41426-018-0118-x
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/10755/1/Comparative_genomics_of_Campylobacter_concisus.pdf
- [ONLINE] View publication in Scopus
Changing molecular epidemiology of rotavirus infection after introduction of monovalent rotavirus vaccination in Scotland
2017 - Published
Mukhopadhya, I., Murdoch, H., Berry, S., Hunt, A., Iturriza-Gomara, M., Smith-Palmer, A., Cameron, J. C., Hold, G. L.
Vaccine, vol. 35, no. 1, pp. 156-163
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.vaccine.2016.11.028
Transporters for Antiretroviral Drugs in Colorectal CD4+ T Cells and Circulating α4β7 Integrin CD4+ T cells: Implications for HIV Microbicides
2016 - Published
Mukhopadhya, I., Murray, G. I., Duncan, L., Yuecel, R., Shattock, R., Kelly, C., Iannelli, F., Pozzi, G., El-Omar, E., Hold, G., Hijazi, K.
Molecular Pharmaceutics, vol. 13, no. 9, pp. 3334-3340
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1021/acs.molpharmaceut.6b00351
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9116/1/Mukhopadhya_et_al_manuscript_figures_table_revision.docx
Susceptibility to chlorhexidine amongst multidrug-resistant clinical isolates of Staphylococcus epidermidis from bloodstream infections
2016 - Published
Hijazi, K., Mukhopadhya, I., Abbott, F., Milne, K., Al-Jabri, Z. J., Oggioni, M. R., Gould, I. M.
International Journal of Antimicrobial Agents, vol. 48, no. 1, pp. 86-90
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.ijantimicag.2016.04.015
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8641/4/Hijazi_et_al_ms_table_figures_IJAA_v2_clean.pdf
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8641/2/Supplemental_table_1.docx
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8641/1/Supplemental_file_2.docx.xlsx
Drug Transporter Gene Expression in Human Colorectal Tissue and Cell Lines: Modulation with Antiretrovirals for Microbicide Optimization
2016 - Published
Mukhopadhya, I., Murray, G. I., Berry, S., Thomson, J., Frank, B., Gwozdz, G., Ekeruche-Makinde, J., Shattock, R., Kelly, C., Iannelli, F., Pozzi, G., El-Omar, E. M., Hold, G. L., Hijazi, K.
Journal of Antimicrobial Chemotherapy, vol. 71, no. 2, pp. 372-386
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/jac/dkv335
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8110/1/Manuscript_tables_figures_Mukhopadhya_et_al_v2.docx
Genotyping of rotavirus isolates prior to the introduction of the rotavirus vaccine in scotland and early indications of the impact of the vaccine
2015 - Published
Mukhopadhya, I., Berry, S., Hunt, A., Murdoch, H., Smith-Palmer, A., Hold, G. L.
2nd Digestive-Disorders-Federation Conference, pp. A510-A511
Contributions to Journals: Abstracts
- [ONLINE] DOI: https://doi.org/10.1136/gutjnl-2015-309861.1116
The fungal microbiota of de-novo paediatric inflammatory bowel disease
2015 - Published
Mukhopadhya, I., Hansen, R., Meharg, C., Thomson, J. M., Russell, R. K., Berry, S. H., El-Omar, E. M., Hold, G. L.
Microbes and Infection, vol. 17, no. 4, pp. 304-310
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.micinf.2014.12.001
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/5118/1/1_s2.0_S1286457914003074_main.pdf
Association of serum antibodies with protection against rotavirus infection and disease in South Indian children
2014 - Published
Premkumar, P., Lopman, B., Ramani, S., Paul, A., Gladstone, B., Muliyil, J., Mukhopadhya, I., Parashar, U., Kang, G.
Vaccine, vol. 32, no. Supp 1, pp. A55-A61
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.vaccine.2014.04.077
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8551/1/S0264410X14006161.htm
Rotavirus infections in a community based cohort in Vellore, India.
2014 - Published
Paul, A., Gladstone, B. P., Mukhopadhya, I., Kang, G.
Vaccine, vol. 32, no. Supp 1, pp. A49-A54
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.vaccine.2014.03.039
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8552/1/1_s2.0_S0264410X14004083_main.pdf
Role of the gut microbiota in inflammatory bowel disease pathogenesis: what have we learnt in the past 10 years?
2014 - Published
Hold, G. L., Smith, M., Grange, C., Watt, E. R., El-Omar, E. M., Mukhopadhya, I.
World Journal of Gastroenterology, vol. 20, no. 5, pp. 1192-1210
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.3748/wjg.v20.i5.1192
Diet, the microbiome, and IBD
2014 - Published
Hold, G. L., Mukhopadhya, I., Hansen, R.
Inflammatory Bowel Disease Monitor, vol. 14, no. 2, pp. 39-43
Contributions to Journals: Literature Reviews
- [ONLINE] View publication in Scopus
Rotavirus shedding in symptomatic and asymptomatic children using reverse transcription-quantitative PCR
2013 - Published
Mukhopadhya, I., Sarkar, R., Menon, V. K., Babji, S., Paul, A., Rajendran, P., Sowmyanarayanan, T. V., Moses, P. D., Iturriza-Gomara, M., Gray, J. J., Kang, G.
Journal of Medical Virology, vol. 85, no. 9, pp. 1661-1668
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.23641
A time-resolved immunoassay to measure serum antibodies to the rotavirus VP6 capsid protein
2013 - Published
Kavanagh, O., Zeng, X., Ramani, S., Mukhopadhya, I., Crawford, S. E., Kang, G., Estes, M. K.
Journal of Virological Methods, vol. 189, no. 1, pp. 228-231
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.jviromet.2012.11.003
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/10178/1/1_s2.0_S0166093412003771_main.pdf
The microaerophilic microbiota of de-novo paediatric inflammatory bowel disease: the BISCUIT study
2013 - Published
Hansen, R., Berry, S. H., Mukhopadhya, I., Thomson, J. M., Saunders, K. A., Nicholl, C. E., Bisset, W. M., Loganathan, S., Mahdi, G., Kastner-Cole, D., Barclay, A. R., Bishop, J., Flynn, D. M., McGrogan, P., Russell, R. K., El-Omar, E. M., Hold, G. L.
PloS ONE, vol. 8, no. 3, e58825
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0058825
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3619/1/Hansen_et_al_PLoS_One_2013.pdf
Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis
2012 - Published
Hansen, R., Russell, R. K., Reiff, C., Louis, P., McIntosh, F., Berry, S. H., Mukhopadhya, I., Bisset, W. M., Barclay, A. R., Bishop, J., Flynn, D. M., McGrogan, P., Loganathan, S., Mahdi, G., Flint, H. J., El-Omar, E. M., Hold, G. L.
American journal of gastroenterology, vol. 107, no. 12, pp. 1913-1922
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1038/ajg.2012.335
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2662/1/Microbiota_of_De_Novo_Pediatric_IBD.pdf
IBD-what role do Proteobacteria play?
2012 - Published
Mukhopadhya, I., Hansen, R., El-Omar, E. M., Hold, G. L.
Nature Reviews Gastroenterology & Hepatology, vol. 9, pp. 219-230
Contributions to Journals: Literature Reviews
- [ONLINE] DOI: https://doi.org/10.1038/nrgastro.2012.14
A comprehensive evaluation of colonic mucosal isolates of Sutterella wadsworthensis from inflammatory bowel disease
2011 - Published
Mukhopadhya, I., Hansen, R., Nicholl, C. E., Alhaidan, Y. A., Thomson, J. M., Berry, S. H., Pattinson, C., Stead, D. A., Russell, R. K., El-Omar, E. M., Hold, G. L.
PloS ONE, vol. 6, no. 10, e27076
Contributions to Journals: Articles
- [ONLINE] http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0027076
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0027076
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2168/1/A_Comprehensive_Evaluation_of_Colonic_Mucosal_Isolates_of_Sutterella_wadsworthensis_from_Inflammatory_Bowel_Disease.pdf
The other Helicobacters
2011 - Published
Smet, A., Flahou, B., Mukhopadhya, I., Ducatelle, R., Pasmans, F., Haesebrouck, F., Hold, G. L.
Helicobacter, vol. 16 , no. Suppl 1, pp. 70-75
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/j.1523-5378.2011.00884.x
Protective Effect of Natural Rotavirus Infection in an Indian Birth Cohort
2011 - Published
Gladstone, B. P., Ramani, S., Mukhopadhya, I., Muliyil, J., Sarkar, R., Rehman, A. M., Jaffar, S., Gomara, M. I., Gray, J. J., Brown, D. W. G., Desselberger, U., Crawford, S. E., John, J., Babji, S., Estes, M. K., Kang, G.
The New England Journal of Medicine, vol. 365, no. 4, pp. 337-346
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1056/NEJMoa1006261
Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis
2011 - Published
Mukhopadhya, I., Thomson, J. M., Hansen, R., Berry, S. H., El-Omar, E. M., Hold, G. L.
PloS ONE, vol. 6, no. 6, e21490
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0021490
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2106/1/Detection_of_Campylobacter_concisus_and_Other_Campylobacter_Species_in_Colonic_Biopsies_from_Adults_with_Ulcerative_Colitis.pdf
Enterohepatic Helicobacter in ulcerative colitis: potential pathogenic entities?
2011 - Published
Thomson, J. M., Hansen, R., Berry, S. H., Hope, M. E., Murray, G. I., Mukhopadhya, I., McLean, M. H., Shen, Z., Fox, J. G., El-Omar, E., Hold, G. L.
PloS ONE, vol. 6, no. 2, e17184
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0017184
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/1536/1/Enterohepatic%2520Helicobacter%2520in%2520ulcerative%2520colitis-%2520Potential%2520pathogenic%2520entities.pdf
Possible association between a genetic polymorphism at 8q24 and risk of upper gastrointestinal cancer
2011 - Published
Lochhead, P., Ng, M. T. H., Hold, G. L., Rabkin, C. S., Vaughan, T. L., Gammon, M. D., Risch, H. A., Lissowska, J., Mukhopadhya, I., Chow, W., El-Omar, E. M.
European Journal of Cancer Prevention, vol. 20, no. 1, pp. 54-57
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1097/CEJ.0b013e328341e320
Innate immune sensors and gastrointestinal bacterial infections
2011 - Published
Hold, G. L., Mukhopadhya, I., Monie, T. P.
Clinical & Developmental Immunology, vol. 2011, 579650
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1155/2011/579650
Comparison of viral load and duration of virus shedding in symptomatic and asymptomatic neonatal rotavirus infections
2010 - Published
Ramani, S., Sankaran, P., Arumugam, R., Sarkar, R., Banerjee, I., Mohanty, I., Jana, A. K., Kuruvilla, K. A., Kang, G.
Journal of Medical Virology, vol. 82, no. 10, pp. 1803-7
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.21872
Anti-VP6 IgG antibodies against group A and group C rotaviruses in South India
2010 - Published
Mukhopadhya, I., Anbu, D., Iturriza-Gomara, M., Gray, J. J., Brown, D. W., Kavanagh, O., Estes, M. K., Kang, G.
Epidemiology and Infection, vol. 138, no. 3, pp. 442-7
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1017/S0950268809990732
Assignment of the group A rotavirus NSP4 gene into genotypes using a hemi-nested multiplex PCR assay: a rapid and reproducible assay for strain surveillance studies
2009 - Published
Bányai, K., Bogdán, ?., Szücs, G., Arista, S., De Grazia, S., Kang, G., Banerjee, I., Iturriza-Gómara, M., Buonavoglia, C., Martella, V.
Journal of Medical Microbiology, vol. 58, no. Pt 3, pp. 303-311
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1099/jmm.0.005124-0
Closing the diarrhoea diagnostic gap in Indian children by the application of molecular techniques
2008 - Published
Ajjampur, S. S. R., Rajendran, P., Ramani, S., Banerjee, I., Monica, B., Sankaran, P., Rosario, V., Arumugam, R., Sarkar, R., Ward, H., Kang, G.
Journal of Medical Microbiology, vol. 57, no. Pt 11, pp. 1364-1368
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1099/jmm.0.2008/003319-0
Evidence of intrafamilial transmission of rotavirus in a birth cohort in South India
2008 - Published
Banerjee, I., Primrose Gladstone, B., Iturriza-Gomara, M., Gray, J. J., Brown, D. W., Kang, G.
Journal of Medical Virology, vol. 80, no. 10, pp. 1858-63
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.21263
Polymerase chain reaction in the detection of an 'outbreak' of asymptomatic viral infections in a community birth cohort in south India
2008 - Published
Gladstone, B. P., Iturriza-Gomara, M., Ramani, S., Monica, B., Banerjee, I., Brown, D. W., Gray, J. J., Muliyil, J., Kang, G.
Epidemiology and Infection, vol. 136, no. 3, pp. 399-405
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1017/S0950268807008709
Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India
2007 - Published
Banerjee, I., Iturriza-Gomara, M., Rajendran, P., Primrose, B., Ramani, S., Gray, J. J., Brown, D. W., Kang, G.
Journal of Medical Virology, vol. 79, no. 11, pp. 1768-74
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.20988
Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India
2007 - Published
Banerjee, I., Ramani, S., Primrose, B., Iturriza-Gomara, M., Gray, J. J., Brown, D. W., Kang, G.
Journal of Medical Virology, vol. 79, no. 9, pp. 1413-21
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.20872
Human caliciviruses in symptomatic and asymptomatic infections in children in Vellore, South India
2007 - Published
Monica, B., Ramani, S., Banerjee, I., Primrose, B., Iturriza-Gomara, M., Gallimore, C. I., Brown, D. W., M, F., Moses, P. D., Gray, J. J., Kang, G.
Journal of Medical Virology, vol. 79, no. 5, pp. 544-51
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1002/jmv.20862
Neonatal infection with G10P[11] rotavirus did not confer protection against subsequent rotavirus infection in a community cohort in Vellore, South India
2007 - Published
Banerjee, I., Gladstone, B. P., Le Fevre, A. M., Ramani, S., Iturriza-Gomara, M., Gray, J. J., Brown, D. W., Estes, M. K., Muliyil, J. P., Jaffar, S., Kang, G.
The journal of infectious diseases, vol. 195, no. 5, pp. 625-32
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1086/510853
Geographic information systems and genotyping in identification of rotavirus G12 infections in residents of an urban slum with subsequent detection in hospitalized children: emergence of G12 genotype in South India
2007 - Published
Ramani, S., Banerjee, I., Gladstone, B. P., Sarkar, R., Selvapandian, D., Le Fevre, A. M., Jaffar, S., Iturriza-Gomara, M., Gray, J. J., Estes, M. K., Brown, D. W., Kang, G.
Journal of Clinical Microbiology, vol. 45, no. 2, pp. 432-7
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1128/JCM.01710-06
Efficacy and acceptability of chlorine dioxide water disinfectant
2007 - Published
Jacob, A., Ramani, S., Banerjee, I., Kang, G.
Indian journal of medical microbiology, vol. 25, no. 1, pp. 74-5
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.4103/0255-0857.31074
Comparative study of the epidemiology of rotavirus in children from a community-based birth cohort and a hospital in South India
2006 - Published
Banerjee, I., Ramani, S., Primrose, B., Moses, P., Iturriza-Gomara, M., Gray, J. J., Jaffar, S., Monica, B., Muliyil, J. P., Brown, D. W., Estes, M. K., Kang, G.
Journal of Clinical Microbiology, vol. 44, no. 7, pp. 2468-74
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1128/JCM.01882-05
Multilocus genotyping of Cryptosporidium sp. isolates from human immunodeficiency virus-infected individuals in South India
2006 - Published
Muthusamy, D., Rao, S. S., Ramani, S., Monica, B., Banerjee, I., Abraham, O. C., Mathai, D. C., Primrose, B., Muliyil, J., Wanke, C. A., Ward, H. D., Kang, G.
Journal of Clinical Microbiology, vol. 44, no. 2, pp. 632-4
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1128/JCM.44.2.632-634.2006
Enteric parasites in patients with diarrhoea presenting to a tertiary care hospital: comparison of Human Immunodeficiency Virus infected and uninfected individuals
2005 - Published
Banerjee, I., Primrose, B., Roy, S., Kang, G.
The Journal of the Association of Physicians of India, vol. 53, pp. 492
Contributions to Journals: Articles

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Butyrate-producing bacteria as probiotic supplement: beneficial effects on metabolism and modulation of behaviour in an obesity mouse model

Butyrate-producing bacteria as probiotic supplement: beneficial effects on metabolism and modulation of behavior in an obesity mouse model

Is HBx protein the X factor in the pathogenesis of IBD?

Comparison of microbial signatures between paired faecal and rectal biopsy samples from healthy volunteers using next-generation sequencing and culturomics

Dietary fibre complexity and its influence on functional groups of the human gut microbiota

Oral bacterial diversity is inversely correlated with mucosal inflammation

In vivo modulation of cervicovaginal drug transporters and tissue distribution by film-released tenofovir and darunavir for topical prevention of HIV-1

Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria

Comparative genomics and genome biology of Campylobacter showae

The gut virome: the ‘missing link’ between gut bacteria and host immunity?

Mechanistic insights into the cross-feeding of Ruminococcus gnavus and Ruminococcus bromii on host and dietary carbohydrates

Review article: the gut microbiome in inflammatory bowel disease-avenues for microbial management

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii

Comparative genomics of Campylobacter concisus : Analysis of clinical strains reveals genome diversity and pathogenic potential

Changing molecular epidemiology of rotavirus infection after introduction of monovalent rotavirus vaccination in Scotland

Transporters for Antiretroviral Drugs in Colorectal CD4+ T Cells and Circulating α4β7 Integrin CD4+ T cells: Implications for HIV Microbicides

Susceptibility to chlorhexidine amongst multidrug-resistant clinical isolates of Staphylococcus epidermidis from bloodstream infections

Drug Transporter Gene Expression in Human Colorectal Tissue and Cell Lines: Modulation with Antiretrovirals for Microbicide Optimization

Genotyping of rotavirus isolates prior to the introduction of the rotavirus vaccine in scotland and early indications of the impact of the vaccine

The fungal microbiota of de-novo paediatric inflammatory bowel disease

Association of serum antibodies with protection against rotavirus infection and disease in South Indian children

Rotavirus infections in a community based cohort in Vellore, India.

Role of the gut microbiota in inflammatory bowel disease pathogenesis: what have we learnt in the past 10 years?

Diet, the microbiome, and IBD

Rotavirus shedding in symptomatic and asymptomatic children using reverse transcription-quantitative PCR

A time-resolved immunoassay to measure serum antibodies to the rotavirus VP6 capsid protein

The microaerophilic microbiota of de-novo paediatric inflammatory bowel disease: the BISCUIT study

Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis

IBD-what role do Proteobacteria play?

A comprehensive evaluation of colonic mucosal isolates of Sutterella wadsworthensis from inflammatory bowel disease

The other Helicobacters

Protective Effect of Natural Rotavirus Infection in an Indian Birth Cohort

Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis

Enterohepatic Helicobacter in ulcerative colitis: potential pathogenic entities?

Possible association between a genetic polymorphism at 8q24 and risk of upper gastrointestinal cancer

Innate immune sensors and gastrointestinal bacterial infections

Comparison of viral load and duration of virus shedding in symptomatic and asymptomatic neonatal rotavirus infections

Anti-VP6 IgG antibodies against group A and group C rotaviruses in South India

Assignment of the group A rotavirus NSP4 gene into genotypes using a hemi-nested multiplex PCR assay: a rapid and reproducible assay for strain surveillance studies

Closing the diarrhoea diagnostic gap in Indian children by the application of molecular techniques

Evidence of intrafamilial transmission of rotavirus in a birth cohort in South India

Polymerase chain reaction in the detection of an 'outbreak' of asymptomatic viral infections in a community birth cohort in south India

Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India

Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India

Human caliciviruses in symptomatic and asymptomatic infections in children in Vellore, South India

Neonatal infection with G10P[11] rotavirus did not confer protection against subsequent rotavirus infection in a community cohort in Vellore, South India

Geographic information systems and genotyping in identification of rotavirus G12 infections in residents of an urban slum with subsequent detection in hospitalized children: emergence of G12 genotype in South India

Efficacy and acceptability of chlorine dioxide water disinfectant

Comparative study of the epidemiology of rotavirus in children from a community-based birth cohort and a hospital in South India

Multilocus genotyping of Cryptosporidium sp. isolates from human immunodeficiency virus-infected individuals in South India

Enteric parasites in patients with diarrhoea presenting to a tertiary care hospital: comparison of Human Immunodeficiency Virus infected and uninfected individuals

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Contributions to Journals

Working Papers