Professor Berndt Muller
Emeritus Professor
- About
-
- Email Address
- b.mueller@abdn.ac.uk
- Office Address
- School/Department
- School of Medicine, Medical Sciences and Nutrition
Latest Publications
A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs
Nucleic Acids Research, vol. 52, no. 12, pp. 7245-7260Contributions to Journals: ArticlesCMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals
RNA , vol. 28, no. 10, pp. 1377-1390Contributions to Journals: ArticlesA novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
Nucleic Acids Research, vol. 50, no. 13, pp. 7591-7607Contributions to Journals: ArticlesA Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
Bioluminescence: Methods and Protocols, Volume 1. Kim, S. (ed.). 4 edition. Humana Press, pp. 197-207, 11 pagesChapters in Books, Reports and Conference Proceedings: Chapters (Peer-Reviewed)- [ONLINE] DOI: https://doi.org/10.1007/978-1-0716-2453-1_15
SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
BMC Bioinformatics, vol. 22, 140Contributions to Journals: Articles
- Publications
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Page 1 of 1 Results 1 to 54 of 54
A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs
Nucleic Acids Research, vol. 52, no. 12, pp. 7245-7260Contributions to Journals: ArticlesCMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals
RNA , vol. 28, no. 10, pp. 1377-1390Contributions to Journals: ArticlesA novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
Nucleic Acids Research, vol. 50, no. 13, pp. 7591-7607Contributions to Journals: ArticlesA Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
Bioluminescence: Methods and Protocols, Volume 1. Kim, S. (ed.). 4 edition. Humana Press, pp. 197-207, 11 pagesChapters in Books, Reports and Conference Proceedings: Chapters (Peer-Reviewed)- [ONLINE] DOI: https://doi.org/10.1007/978-1-0716-2453-1_15
SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
BMC Bioinformatics, vol. 22, 140Contributions to Journals: ArticlesSLIDR and SLOPPR:: Flexible identification of spliced leadertrans-splicing and prediction of eukaryotic operons from RNA-Seq data
Working Papers: Preprint Papers- [ONLINE] DOI: https://doi.org/10.1101/2020.12.23.423594
Resolution of polycistronic RNA by SL2 trans-splicing is a widely-conserved nematode trait
RNA , vol. 26, no. 12, pp. 1891-1904Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1261/rna.076414.120
- [ONLINE] View publication in Scopus
Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome
bioRxivContributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1101/642082
- [ONLINE] http://biorxiv.org/cgi/content/short/642082v1?rss=1
- [ONLINE] View publication in Mendeley
A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor
Molecular Neurobiology, vol. 56, no. 10, pp. 7074-7084Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1007/s12035-019-1571-9
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/13053/1/Khatib2019_Article_ABioluminescenceReporterAssayF_VOR.pdf
- [ONLINE] View publication in Mendeley
- [ONLINE] https://abdn.pure.elsevier.com/en/en/researchoutput/a-bioluminescence-reporter-assay-for-retinoic-acid-control-of-translation-of-the-glur1-subunit-of-the-ampa-glutamate-receptor(a78ef07e-56a4-4bc5-975f-012dfb9e5cf5).html
- [ONLINE] View publication in Scopus
A high-throughput screen for the identification of compounds that inhibit nematode gene expression by targeting spliced leader trans-splicing
International Journal for Parasitology: Drugs and Drug Resistance, vol. 10, pp. 28-37Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.ijpddr.2019.04.001
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/12209/1/A_high_throughput_screen_for_the_identification_of_compounds_that_inhibit_nematode_gene_expression_by_targeting_spliced_leader_trans_splicing.pdf
- [ONLINE] View publication in Scopus
- [ONLINE] View publication in Mendeley
An in vivo genetic screen for genes involved in spliced leader trans-splicing indicates a crucial role for continuous de novo spliced leader RNP assembly
Nucleic Acids Research, vol. 45, no. 14, pp. 8474-8483Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/nar/gkx500
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/8751/3/An_in_vivo_genetic_screen_for_genes_involved_in_spliced_leader_trans_splicing_indicates_a_crucial_role_for_continuous_de_novo_spliced_leader_RNP_assembly.pdf
- [ONLINE] https://abdn.elsevierpure.com/en/publications/5c833370-19ee-4f43-a89f-287b19833814
Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication
PloS ONE, vol. 11, no. 10, e0165848Contributions to Journals: ArticlesMutation of genes controlling mRNA metabolism and protein synthesis predisposes to neurodevelopmental disorders
Biochemical Society Transactions, vol. 43, no. 6, pp. 1259-1265Contributions to Journals: ArticlesFull UPF3B function is critical for neuronal differentiation of neural stem cells
Molecular brain, vol. 8, 33Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/s13041-015-0122-1
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/4555/1/s13041_015_0122_1.pdf
Operons Are a Conserved Feature of Nematode Genomes
Genetics, vol. 197, no. 4, pp. 1201-1211Contributions to Journals: Articles- [ONLINE] http://www.genetics.org/content/197/4/1201.full
- [ONLINE] DOI: https://doi.org/10.1534/genetics.114.162875
Replication stress-induced alternative mRNA splicing alters properties of the histone RNA-binding protein HBP/SLBP: a key factor in the control of histone gene expression
Bioscience Reports, vol. 33, no. 5, e00066Contributions to Journals: ArticlesThe control of histone gene expression
Biochemical Society Transactions, vol. 40, no. 4, pp. 880-885Contributions to Journals: Literature ReviewsSL2-like spliced leader RNAs in the basal nematode Prionchulus punctatus: new insight into the evolution of nematode SL2 RNAs
RNA , vol. 16, no. 8, pp. 1500-1507Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1261/rna.2155010
The evolution of spliced leader trans-splicing in nematodes
Biochemical Society Transactions, vol. 38, no. 4, pp. 1125-1130Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1042/BST0381125
Deregulation of EIF4E: a novel mechanism for autism
Journal of Medical Genetics, vol. 46, no. 11, pp. 759-765Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1136/jmg.2009.066852
Treatment and Diagnosis of Behavioural Disorders
Patents: PatentsPost-transcriptional control of animal histone gene expression: not so different after all...
Molecular BioSystems, vol. 4, no. 7, pp. 721-725Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1039/b802133c
Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
RNA , vol. 14, no. 4, pp. 760-770Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1261/rna.948008
DNA-activated protein kinase functions in a newly observed S phase checkpoint that links histone mRNA abundance with DNA replication
Journal of Cell Biology, vol. 179, no. 7, pp. 1385-1398Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1083/JCB.200708106
Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans
BMC Molecular Biology, vol. 8, 51Contributions to Journals: ArticlesAre multiple checkpoint mediators involved in a checkpoint linking histone gene expression with DNA replication?
Biochemical Society Transactions, vol. 35, no. 5, pp. 1369-1371Contributions to Journals: Letters- [ONLINE] DOI: https://doi.org/10.1042/BST0351369
The stem-loop binding protein stimulates histone translation at an early step in the initiation pathway
RNA , vol. 11, no. 7, pp. 1030-1042Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1261/rna.7281305
The human histone gene expression regulator HBP/SLBP is required for histone and DNA synthesis, cell cycle progression and cell proliferation in mitotic cells
Journal of Cell Science, vol. 117, no. 25, pp. 6043-6051Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1242/JCS.01523
The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division
Journal of Cell Science, vol. 115, no. 4, pp. 857-866Contributions to Journals: ArticlesStructure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression
RNA , vol. 8, no. 1, pp. 29-46Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1017/S1355838202014061
Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein
EMBO Journal, vol. 20, no. 19, pp. 5470-5479Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/emboj/20.19.5470
Assembly of U7 small nuclear ribonucleoprotein particle and histone RNA 3 ' processing in Xenopus egg extracts
The Journal of Biological Chemistry, vol. 275, no. 32, pp. 24284-24293Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1074/jbc.M003253200
Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system
Nucleic Acids Research, vol. 28, no. 7, pp. 1594-1603Contributions to Journals: ArticlesSpecificities of Caenorhabditis elegans and human hairpin binding proteins for the first nucleotide in the histone mRNA hairpin loop
RNA , vol. 6, no. 11, pp. 1539-1550Contributions to Journals: ArticlesA 5 '-3 ' exonuclease activity involved in forming the 3 ' products of histone pre-mRNA processing in vitro
RNA , vol. 4, no. 9, pp. 1034-1046Contributions to Journals: ArticlesThe U7 snRNP and the hairpin binding protein: Key players in histone mRNA metabolism
Seminars in Cell & Developmental Biology, vol. 8, no. 6, pp. 567-576Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1006/scdb.1997.0182 |
Characterization of the calf thymus hairpin-binding factor involved in histone pre-mRNA 3' end processing
The Journal of Biological Chemistry, vol. 272, no. 16, pp. 10435-10441Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1074/jbc.272.16.10435
The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein
EMBO Journal, vol. 16, no. 4, pp. 769-778Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/emboj/16.4.769
Processing of Holliday Junctions by the Escherichia-Coli RuvA, RuvB, RuvC and RECG Proteins
Experientia, vol. 50, no. 3, pp. 216-222Contributions to Journals: Literature ReviewsAn assay for in vitro recombination between duplex DNA molecules
DNA-Protein Interactions: Principles and Protocols. Kneale, G. (ed.). Humana Press, pp. 413-423Chapters in Books, Reports and Conference Proceedings: ChaptersBranch Migration of Holliday Junctions Promoted by the Escherichia coli RuvA and RuvB Proteins: 2. Interaction of RuvB with DNA
The Journal of Biological Chemistry, vol. 268, no. 23, pp. 17185-17189Contributions to Journals: ArticlesBranch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins: I. Comparison of RuvAB- and RuvB-mediated reactions
The Journal of Biological Chemistry, vol. 268, no. 23, pp. 17179-17184Contributions to Journals: ArticlesUnusual Stability of Recombination Intermediates made by Escherichia coli RecA Protein
EMBO Journal, vol. 11, no. 7, pp. 2685-2693Contributions to Journals: ArticlesATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli
Cell, vol. 69, no. 7, pp. 1171-1180Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/0092-8674(92)90638-S
Action of RecBCD enzyme on Holliday structures made by RecA
The Journal of Biological Chemistry, vol. 266, no. 28, pp. 19028-19033Contributions to Journals: ArticlesRecA-mediated annealing of single-stranded DNA and its relation to the mechanism of homologous recombination
Journal of Molecular Biology, vol. 221, no. 1, pp. 131-145Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/0022-2836(91)80210-L
T7 endonuclease I resolves Holliday junctions formed in vitro by RecA protein
Nucleic Acids Research, vol. 18, no. 19, pp. 5633-5636Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/nar/18.19.5633
Characterization of the DNA binding activity of stable RecA-DNA complexes: Interaction between the two DNA binding sites within RecA helical filaments
Journal of Molecular Biology, vol. 212, no. 1, pp. 97-112Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/0022-2836(90)90307-8
Enzymatic formation and resolution of Holliday junctions in vitro
Cell, vol. 60, no. 2, pp. 329-336Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/0092-8674(90)90747-3
Intermediates in genetic recombination: formation and resolution of Holliday junctions in vitro
Structure and Methods: Volume I: Human genome initiative & DNA Recombination. Sama, R., Sama, M. (eds.). Adenine Press, pp. 193-202Chapters in Books, Reports and Conference Proceedings: ChaptersMolecular mechanism of post-replication repair
Progress in Clinical & Biological Research, vol. 340A, pp. 121-133Contributions to Journals: Literature ReviewsMolecular mechanism of post-replicational repair: formation and resolution of recombination intermediates
Mutation and the Environment: 5th International conference on environmental mutagens : Papers. Mendelsohn, M., Albertini, R. (eds.). Wiley/Lyss Inc, pp. 121-133Chapters in Books, Reports and Conference Proceedings: ChaptersResolution of Holliday Junctions Within RECA Helical Filaments
Ionizing Radiation Damage to DNA: Molecular Aspects. Wallace, S. S., Painter, R. B. (eds.). Wiley-Liss, pp. 163-171, 9 pagesChapters in Books, Reports and Conference Proceedings: ChaptersThe accessibility of DNA to dimethylsulfate in complexes with recA protein
EMBO Journal, vol. 6, no. 8, pp. 2493-2498Contributions to Journals: Articles
