BA (University of Cambridge, 1989), PhD (MRC Laboratory of Molecular Biology, Cambridge, 1994)
Personal Chair
- About
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- Email Address
- a.d.donaldson@abdn.ac.uk
- Telephone Number
- +44 (0)1224 437316
- Office Address
Room 2:17 Institute of Medical Sciences Foresterhill University of Aberdeen Aberdeen AB25 2ZD Lab phone +44 (0)1224 437312
- School/Department
- School of Medicine, Medical Sciences and Nutrition
Biography
Anne Donaldson investigates how cells replicate their DNA, a central biological process that is essential for cell multiplication. Her research group is funded by major grants from Cancer Research UK and the Wellcome Trust. Within the Institute of Medical Sciences Anne leads the 'Chromosome & Cellular Dynamics' Section, consisting of six research groups who share interests in chromosome dynamics. Anne teaches on topics related to chromosome maintenance on several undergraduate and graduate-level courses.
After her Bachelors degree in Natural Sciences at the University of Cambridge, Anne completed her PhD at the MRC Laboratory of Molecular Biology, then moved as a NATO/SERC postdoctoral fellow to the University of Washington in Seattle. Anne established her lab as a Royal Society University Research Fellow at the University of Dundee, and in 2001 Anne was chosen as an EMBO Young Investigator. The Donaldson laboratory has been at the University of Aberdeen Institute of Medical Sciences since 2003.
Anne served as Organizer of the Cold Spring Harbor Eukaryotic DNA Replication & Genome Maintenance meeting from 2014-2019.
- Research
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Research Overview
!!We have Postdoc and PhD positions available in the lab, funded by the Wellcome Trust and by Cancer Research UK!!
Interested applicants please send CV to Anne Donaldson with an explanation of your interest in our research area and your related lab experience.
Human cells contain 1.8 metres of DNA in a nucleus only about 6 microns in diameter. During chromosome replication this entire length of DNA must be duplicated exactly once with perfect accuracy, so that the strands can be disentangled and precisely segregated to the daughter cells. The DNA is extremely vulnerable to damage during this process, and cells must deal with thousands of potentially lethal DNA damage events every single day. Members of the Donaldson lab investigate the molecular controls over DNA replication and damage repair. Understanding chromosome maintenance will suggest new therapeutic strategies in the fight against cancer, as well as illuminating the basic mechanisms at the heart of the cell division cycle.
The budding yeast S. cerevisiae provides an excellent model organism for studying the fundamentals of chromosome biology, because of the remarkable molecular genetics tools available for this system. DNA replication initiates at multiple sites on each chromosome called replication origins. We use molecular genetics to understand the processes of yeast DNA replication, which we then investigate in human cells. Using this approach we have discovered several molecular mechanisms of replication control that operate throughout eukaryotic cells.
Our focus of interest is understanding the molecular machinery controlling origin initiation, replication fork progression, and chromosome maintenance. We use a combination of advanced proteomic, biochemical, genomic and microscopy methods to investigate the cellular components that regulate these DNA replication and repair processes.
Funding and Grants
Cancer Research UK Programme Award (£1,561,000) ‘How does Rif1 regulate DNA replication and cell recovery after chemotherapeutic replication inhibition?' Grant to Prof Anne Donaldson & Dr Shin-ichiro Hiraga
Wellcome Trust Discovery Award (£2,475,614) ‘Control of DNA Replication by Protein Dephosphorylation: the Role of Protein Phosphatase 1 and its Regulatory Interactors’
- Publications
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Page 1 of 1 Results 1 to 39 of 39
Checkpoint phosphorylation sites on budding yeast Rif1 protect nascent DNA from degradation by Sgs1-Dna2
PLoS Genetics, vol. 19, no. 11, e1011044Contributions to Journals: ArticlesProtection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region
eLife, vol. 11, e75047Contributions to Journals: ArticlesSAF-A promotes origin licensing and replication fork progression to ensure robust DNA replication
Journal of Cell Science, vol. 135, no. 2, jcs.258991Contributions to Journals: ArticlesProtein phosphatase 1 acts as a RIF1 effector to suppress DSB resection prior to Shieldin action
Cell Reports, vol. 36, no. 2, 109383Contributions to Journals: ArticlesReplication timing maintains the global epigenetic state in human cells
Science, vol. 372, no. 6540, pp. 371-378Contributions to Journals: ArticlesThe RIF1-Long splice variant promotes G1 phase 53BP1 nuclear bodies to protect against replication stress
eLife, vol. 9, e58020Contributions to Journals: ArticlesGenome-wide analysis of DNA replication timing in single cells: Yes! We're all individuals
Genome Biology, vol. 20, 111Contributions to Journals: ArticlesHuman RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling
Cell Reports, vol. 27, no. 9, pp. 2558-2566.e4Contributions to Journals: ArticlesIdentification of Elg1 interaction partners and effects on post-replication chromatin re-formation
PLoS Genetics, vol. 14, no. 11, e1007783Contributions to Journals: ArticlesBudding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks
EMBO reports, vol. 19, no. 9, e46222Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.15252/embr.201948152
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/11048/1/embr.201846222.full.pdf
- [ONLINE] View publication in Scopus
Rif1 acts through Protein Phosphatase 1 but independent of replication timing to suppress telomere extension in budding yeast
Nucleic Acids Research, vol. 46, no. 8, pp. 3993-4003Contributions to Journals: ArticlesHuman RIF1 and protein phosphatase 1 stimulate DNA replication origin licensing but suppress origin activation
EMBO reports, vol. 18, no. 3, pp. 403-419Contributions to Journals: ArticlesPositive and negative control of DNA replication by human RIF1 protein: A safeguard mechanism
10th 3R International SymposiumContributions to Conferences: PostersProtein Phosphatases and DNA Replication Initiation
The Initiation of DNA Replication in Eukaryotes. Kaplan, D. L. (ed.). Springer, pp. 461-477, 17 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1007/978-3-319-24696-3_23
Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation
Cell Reports, vol. 12, no. 5, pp. 774-787Contributions to Journals: ArticlesAt Short Telomeres Tel1 Directs Early Replication and Phosphorylates Rif1
PLoS Genetics, vol. 10, no. 10, e1004691Contributions to Journals: ArticlesRif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex
Genes & Development, vol. 28, no. 4, pp. 372-383Contributions to Journals: ArticlesNegative regulation of DNA replication by Rif1 through protein phosphatase PP-1
CSH Meeting "Eukaryotic DNA replication and genome maintenance"Contributions to Conferences: PostersIs PCNA unloading the central function of the Elg1/ATAD5 replication factor C-like complex?
Cell Cycle, vol. 12, no. 16, pp. 2570-2579Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.4161/cc.25626
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3397/1/Cell_Cycle.pdf
The Elg1 replication factor C-like complex functions in PCNA unloading during DNA replication
Molecular Cell, vol. 50, no. 2, pp. 273-280Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/j.molcel.2013.02.012
Negative regulation of DNA replication by Rif1 through DDK
British Yeast Group Meeting 2013Contributions to Conferences: PostersTFIIIC Localizes Budding Yeast ETC Sites to the Nuclear Periphery
Molecular Biology of the Cell, vol. 23, no. 14, pp. 2741-2754Contributions to Journals: ArticlesQuantitative proteomic analysis of yeast DNA replication proteins
Methods, vol. 57, no. 2, pp. 196-202Contributions to Journals: Articles- [ONLINE] http://www.ncbi.nlm.nih.gov/pubmed/22465796
- [ONLINE] DOI: https://doi.org/10.1016/j.ymeth.2012.03.012
Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint
Molecular and Cellular Proteomics, vol. 10, no. 7, M110 005561Contributions to Journals: Articles- [ONLINE] http://www.ncbi.nlm.nih.gov/pubmed/21505101
- [ONLINE] DOI: https://doi.org/10.1074/mcp.M110.005561
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2495/1/Kubota_2011.pdf
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation
Molecular Biology of the Cell, vol. 22, no. 10, pp. 1753-1756Contributions to Journals: Articles- [ONLINE] http://www.ncbi.nlm.nih.gov/pubmed/21441303
- [ONLINE] DOI: https://doi.org/10.1091/mbc.E10-06-0549
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2269/1/Lian_2011.pdf
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
EMBO Journal, vol. 30, no. 23, pp. 4805-4814Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1038/emboj.2011.404
Early initiation of a replication origin tethered at the nuclear periphery
Journal of Cell Science, vol. 123, pp. 1015-1019Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1242/jcs.060392
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/760/1/Ebrahimi_et_al_2010.pdf
Detection of replication origins using comparative genomics and recombinational ARS assay
DNA Replication: Methods and Protocols. Vengrova, S., Dalgaard, J. Z. (eds.). Humana Press, pp. 295-313, 19 pagesChapters in Books, Reports and Conference Proceedings: Chapters- [ONLINE] DOI: https://doi.org/10.1007/978-1-60327-815-7_16
- [ONLINE] View publication in Scopus
Release of yeast telomeres from the nuclear periphery is triggered by replication and maintained by suppression of Ku-mediated anchoring
Genes & Development, vol. 22, no. 23, pp. 3363-3374Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1101/gad.486208
Histone H3 lysine 56 acetylation by Rtt109 is crucial for chromosome positioning
Journal of Cell Biology, vol. 183, no. 4, pp. 641-651Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1083/jcb.200806065
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2273/1/Hiraga_et_al_2008.pdf
OriDB: a DNA replication origin database
Nucleic Acids Research, vol. 35, no. Database Issue, pp. D40-D46Contributions to Journals: ArticlesGenome-wide identification of replication origins in yeast by comparative genomics
Genes & Development, vol. 20, no. 14, pp. 1874-1879Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1101/gad.385306
The Ctf18 RFC-like complex positions yeast telomeres but does not specify their replication time
EMBO Journal, vol. 25, no. 7, pp. 1505-1514Contributions to Journals: Articles- [ONLINE] http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440320/
- [ONLINE] DOI: https://doi.org/10.1038/SJ.EMBOJ.7601038
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/802/1/52667.pdf
The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription
Nucleic Acids Research, vol. 33, no. 8, pp. 2410-2420Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1093/nar/gki539
Shaping time: chromatin structure and the DNA replication programme
Trends in Genetics, vol. 21, pp. 444-449Contributions to Journals: Literature Reviews- [ONLINE] DOI: https://doi.org/10.1016/j.tig.2005.05.012
DNA replication: telling time with microarrays
Genome Biology, vol. 4, no. 2Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/gb-2003-4-2-204
Ku complex controls the replication time of DNA in telomere regions
Genes & Development, vol. 16, no. 19, pp. 2485-2490Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1101/gad.231602
DNA replication: stable driving prevents fatal smashes
Current Biology, vol. 11, no. 23, pp. R979-82Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1016/S0960-9822(01)00579-6
Eukaryotic DNA Replication: from ORC to fork
Genome Biology, vol. 2, pp. 4030.1-4030.3Contributions to Journals: Articles- [ONLINE] DOI: https://doi.org/10.1186/gb-2001-2-12-reports4030