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The School of Natural and Computing Sciences

Professor M Carmen Romano

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Professor M Carmen Romano
Professor M Carmen Romano
Professor M Carmen Romano

Personal Chair

About
Email Address
m.romano@abdn.ac.uk
Telephone Number
+44 (0)1224 272507
Office Address
Office 337, Institute for Complex Systems and Mathematical Biology, Department of Physics, Meston Building, Old Aberdeen Office 3:47, Institute of Medical Sciences, Foresterhill
School/Department
School of Natural and Computing Sciences
Research

Research Overview

I am interested in the understanding of fundamental biological processes using theoretical approaches based on nonlinear dynamics and statistical physics and combining them with experimental data. In particular, I am interested in the process of translation or synthesis of proteins, the coupling between transcription and translation, how ribosomes, the molecular machines that manufacture proteins, are synthesised, and its relationship to the cell cycle. I am furthermore interested in the effect of combinatorial stresses in yeast, as well as the effects of different types of stress on the cell cycle.

Funding and Grants

SULSA studentship (modeling of translation)/ SABR grant (Combinatorial Responses In Stress Pathways)/BBSRC grant (Ribosome Traffic Flow on the mRNA as a Regulator of Cellular Protein Production)
Teaching

Teaching Responsibilities

Electromagnetism (PX3008, 3rd year Physics) and Introduction to Mathematics and Modelling of Biological Systems (SB5005, MSc in Cell and Molecular Systems Biology)

Publications

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  • What determines sub-diffusive behavior in crowded protein solutions?

    Kompella, V. P. S., Romano, M. C., Stansfield, I., Mancera, R. L.
    Biophysical Journal, vol. 123, no. 2, pp. 134-146
    Contributions to Journals: Articles

  • ExpressInHost: A codon tuning tool for the expression of recombinant proteins in host microorganisms

    Raguin, A., Stansfield, I., Romano, M. C.
    Journal of Open Research Software, vol. 11, no. 2
    Contributions to Journals: Articles

  • Two-species totally asymmetric simple exclusion process model: From a simple description to intermittency and traveling traffic jams

    Bonnin, P., Stansfield, I., Romano, M. C., Kern, N.
    Physical Review E, vol. 105, no. 3, 034117
    Contributions to Journals: Articles

  • The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels

    McFarland, M. R., Keller, C. D., Childers, B. M., Adeniyi, S. A., Corrigall, H., Raguin, A., Romano, M. C., Stansfield, I.
    Nucleic Acids Research, vol. 48, no. 6, pp. 3071-3088
    Contributions to Journals: Articles

  • Translational control of gene expression via interacting feedback loops

    Wang, L., Romano, M. C., Davidson, F. A.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 100, no. 5, 050402(R)
    Contributions to Journals: Articles

  • Definition Of The Minimal Contents For The Molecular Simulation Of The Yeast Cytoplasm

    Kompella, V. P. S., Stansfield, I., Romano, M. C., Mancera, R. L.
    Frontiers in Molecular Biosciences, vol. 6, 97
    Contributions to Journals: Articles

  • Power series solution of the inhomogeneous exclusion process

    Szavits-Nossan, J., Romano, M. C., Ciandrini, L.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 97, no. 5, 052139
    Contributions to Journals: Articles

  • Deciphering mRNA Sequence Determinants of Protein Production Rate

    Szavits-Nossan, J., Ciandrini, L., Romano, M. C.
    Physical Review Letters, vol. 120, no. 12, 128101
    Contributions to Journals: Articles

  • Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile

    Bonnin, P., Kern, N., Young, N. T., Stansfield, I., Romano, M. C.
    PLoS Computational Biology , vol. 13, no. 5, e1005555
    Contributions to Journals: Articles

  • Synthetic biology routes to bio-artificial intelligence

    Nesbeth, D. N., Zaikin, A., Saka, Y., Romano, M. C., Giuraniuc, C. V., Kanakov, O., Laptyeva, T.
    Essays in Biochemistry, vol. 60, no. 4, pp. 381-391
    Contributions to Journals: Articles

  • Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation

    Gorgoni, B., Ciandrini, L., McFarland, M. R., Romano, M. C., Stansfield, I.
    Nucleic Acids Research, vol. 44, no. 19, pp. 9231-9244
    Contributions to Journals: Articles

  • Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

    Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P., Romano, M. C.
    PloS ONE, vol. 10, no. 9, 0137750
    Contributions to Journals: Articles

  • Minimal model of transcriptional elongation processes with pauses

    Wang, J., Pfeuty, B., Thommen, Q., Romano Blasco, M. C., Lefranc, M.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 90, no. 5, pp. 1-4
    Contributions to Journals: Articles

  • Ribosome recycling induces optimal translation rate at low ribosomal availability

    Marshall, E., Stansfield, I., Romano, M. C.
    Journal of the Royal Society Interface, vol. 11, no. 98, 20140589
    Contributions to Journals: Articles

  • Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective

    Ciandrini, L., Romano, M. C., Parmeggiani, A.
    Biophysical Journal, vol. 107, no. 5, pp. 1176-1184
    Contributions to Journals: Articles

  • Identifying coupling directions by recurrences

    Zou, Y., Romano, M. C., Thiel, M., Kurths, J.
    Recurrence Quantification Analysis: Theory and Best Practices - Part I. Webber Jr, C. L., Marwan, N. (eds.). Springer Verlag, pp. 65-99, 35 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters

  • Controlling translation elongation efficiency: tRNA regulation of ribosome flux on the mRNA

    Gorgoni, B., Marshall, E., McFarland, M. R., Romano, M. C., Stansfield, I.
    Biochemical Society Transactions, vol. 42, no. 1, pp. 160-165
    Contributions to Journals: Articles

  • Dominant-negative release factors and their effect on termination and translational recoding events

    McFarland, M. R., Romano, M. C., Stansfield, I.
    RNA UK 2014
    Contributions to Conferences: Posters

  • The wiper model: avalanche dynamics in an exclusion process

    Politi, A., Romano, M. C.
    Journal of statistical mechanics-Theory and experiment, vol. 2013, 10015
    Contributions to Journals: Articles

  • From START to FINISH: the influence of osmotic stress on the cell cycle

    Radmaneshfar, E., Kaloriti, D., Gustin, M. C., Gow, N. A. R., Brown, A. J. P., Grebogi, C., Romano, M. C., Thiel, M.
    PloS ONE, vol. 8, no. 7, e68067
    Contributions to Journals: Articles

  • Dominant-negative release factors and their effect on termination and translational recoding events

    McFarland, M. R., Romano, M. C., Stansfield, I.
    Translation UK 2013
    Contributions to Conferences: Posters

  • Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation

    Ciandrini, L., Stansfield, I., Romano, M. C.
    PLoS Computational Biology , vol. 9, no. 1, e1002866
    Contributions to Journals: Articles

  • A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation

    Kemp, A., Betney, R., Ciandrini, L., Schwenger, A. C., Romano, M. C., Stansfield, I.
    Molecular Microbiology, vol. 87, no. 2, pp. 284–300
    Contributions to Journals: Articles

  • Transport on a lattice with dynamical defects

    Turci, F., Parmeggiani, A., Pitard, E., Romano, M. C., Ciandrini, L.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 87, no. 1, 012705
    Contributions to Journals: Articles

  • Combinatorial stresses kill pathogenic Candida species

    Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K., Brown, A. J. P.
    Medical Mycology, vol. 50, no. 7, pp. 699-709
    Contributions to Journals: Articles

  • A max-plus model of ribosome dynamics during mRNA translation

    Brackley, C. A., Broomhead, D. S., Romano, M. C., Thiel, M.
    Journal of Theoretical Biology, vol. 303, no. -, pp. 128-140
    Contributions to Journals: Articles

  • Impact of combinatorial stresses upon Candida albicans

    Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R., Brown, A. J. P.
    Mycoses, vol. 55, no. Suppl. 4, pp. 15
    Contributions to Journals: Abstracts

  • A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

    You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J., Brown, A. J. P.
    BMC Research Notes, vol. 5, 258
    Contributions to Journals: Articles

  • Multiple phase transitions in a system of exclusion processes with limited reservoirs of particles and fuel carriers

    Brackley, C., Ciandrini, L., Romano, M. C.
    Journal of statistical mechanics-Theory and experiment, vol. 2012, no. 3, P03002
    Contributions to Journals: Articles

  • Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles

    Greulich, P., Ciandrini, L., Allen, R., Romano, M. C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 85, no. 1, 011142
    Contributions to Journals: Articles

  • The dynamics of supply and demand in mRNA translation

    Brackley, C. A., Romano, M. C., Thiel, M.
    PLoS Computational Biology , vol. 7, no. 10, e1002203
    Contributions to Journals: Articles

  • Inferring direct coupling by means of recurrences

    Zou, Y., Romano, M. C., Thiel, M., Marwan, N., Kurths, J.
    International Journal of Bifurcation and Chaos, vol. 21, no. 4, pp. 1099-1111
    Contributions to Journals: Articles

  • Analysing GCN4 Translational Control in Yeast by Stochastic Chemical Kinetics Modelling and Simulation

    You, T., Stansfield, I., Romano, M. C., Brown, A. J. P., Coghill, G. M.
    BMC Systems Biology, vol. 5, pp. 131
    Contributions to Journals: Articles

  • Introduction to Focus Issue: Dynamics in Systems Biology

    Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C., Thiel, M.
    Chaos, vol. 20, no. 4, 045101
    Contributions to Journals: Articles

  • Slow sites in an exclusion process with limited resources

    Brackley, C. A., Romano, M. C., Thiel, M.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 5 Pt 1, 051920
    Contributions to Journals: Articles

  • Limited resources in a driven diffusion process

    Brackley, C. A., Romano, M. C., Grebogi, C., Thiel, M.
    Physical Review Letters, vol. 105, no. 7, 078102
    Contributions to Journals: Articles

  • Nonlinear Dynamics and Chaos: Advances and Perspectives

    Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.), de Moura, A. P. S. (ed.)
    Springer Verlag, Dordrecht, Netherlands. 293 pages
    Books and Reports: Books

  • Fetal maternal heart rate entrainment under controlled maternal breathing

    Van Leeuwen, P., Geue, D., Thiel, M., Lange, S., Cysarz, D., Romano, M. C., Kurths, J., Grönemeyer, D. H.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings

  • Role of the particle’s stepping cycle in an asymmetric exclusion process: a model of mRNA translation

    Ciandrini, L., Stansfield, I., Romano, M. C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 81, no. 5, 051904
    Contributions to Journals: Articles

  • An automated algorithm for the generation of dynamically reconstructed trajectories

    Komalapriya, C., Romano, M. C., Thiel, M., Marwan, N., Kurths, J., Kiss, I. Z., Hudson, J. L.
    Chaos, vol. 20, no. 1, 013107
    Contributions to Journals: Articles

  • Distinguishing Direct from Indirect Interactions in Oscillatory Networks with Multiple Time Scales

    Nawrath, J., Romano, M. C., Thiel, M., Kiss, I. Z., Wickramasinghe, M., Timmer, J., Kurths, J., Schelter, B.
    Physical Review Letters, vol. 104, no. 3, 038701
    Contributions to Journals: Articles

  • Influence of paced maternal breathing on fetal–maternal heart rate coordination

    Van Leeuwen, P., Geue, D., Thiel, M., Cysarz, D., Lange, S., Romano, M. C., Wessel, N., Kurths, J., Groenemeyer, D. H.
    PNAS, vol. 106, no. 33, pp. 13661-13666
    Contributions to Journals: Articles

  • Queueing phase transition: Theory of Translation

    Romano, M. C., Thiel, M., Stansfield, I., Grebogi, C.
    Physical Review Letters, vol. 102, no. 19, 198104
    Contributions to Journals: Articles

  • Hypothesis test for synchronization: Twin surrogates revisited

    Romano, M. C., Thiel, M., Kurths, J., Mergenthaler, K., Engbert, R.
    Chaos, vol. 19, no. 1, 015108
    Contributions to Journals: Articles

  • Analysis of high-resolution microelectrode EEG recordings in an animal model of spontaneous limbic seizures

    Komalapriya, C., Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Simonotto, J., Furman, M., Ditto, W. L., Carney, P. R.
    International Journal of Bifurcation and Chaos, vol. 19, no. 2, pp. 605–617
    Contributions to Journals: Articles

  • Dynamically Reconstructed Trajectories

    Komalapriya, C., Thiel, M., Romano, M. C., Kurths, J.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings

  • Reconstruction of a system's dynamics from short trajectories

    Komalapriya, C., Thiel, M., Romano, M. C., Marwan, N., Schwarz, U., Kurths, J.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 6, 066217
    Contributions to Journals: Articles

  • Chaos and nonlinear dynamics: Advances and perspectives

    Karolyi, G., de Moura, A., Romano, M. C., Thiel, M., Kurths, J.
    The European Physical Journal. Special Topics, vol. 165, no. 1, pp. 1-4
    Contributions to Journals: Editorials

  • Continuous wavelet transform in the analysis of burst synchronization in a coupled laser system

    Bergner, A., Meucci, R., Al Naimee, K., Romano, M. C., Thiel, M., Kurths, J., Arecchi, F. T.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 1, 016211
    Contributions to Journals: Articles

  • Generating surrogates from recurrences

    Thiel, M., Romano, M. C., Kurths, J., Rolfs, M., Kliegl, R.
    Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences, vol. 366, no. 1865, pp. 545-557
    Contributions to Journals: Articles

  • Analysis of Bivariate Coupling by Means of Recurrence

    Bandt, C., Groth, A., Marwan, N., Romano, M. C., Thiel, M., Rosenblum, M. C., Kurths, J.
    Mathematical Methods in Signal Processing and Digital Image Analysis. Dahlhaus, R., Kurths, J., Maass, P., Timmer, J. (eds.). Springer Science+Business Media, pp. 153-182, 30 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters

  • Synchronization Analysis of Neuronal Networks by Means of Recurrence Plots

    Bergner, A., Romano, M. C., Kurths, J., Thiel, M.
    Lectures in Supercomputational Neurosciences: Dynamics in Complex Brain Networks. beim Graben, P., Zhou, C., Thiel, M., Kurths, J. (eds.). Springer Science+Business Media, pp. 177-191, 15 pages
    Chapters in Books, Reports and Conference Proceedings: Chapters

  • Analytical description of recurrence plots of dynamical systems with nontrivial recurrences

    Zou, Y., Thiel, M., Romano, M. C., Kurths, J.
    International Journal of Bifurcation and Chaos, vol. 17, no. 12, pp. 4273-4283
    Contributions to Journals: Articles

  • Characterization of stickiness by means of recurrence

    Zou, Y., Thiel, M., Romano, M. C., Kurths, J.
    Chaos, vol. 17, no. 4, 043101
    Contributions to Journals: Articles

  • Estimation of the direction of the coupling by conditional probabilities of recurrence

    Romano, M. C., Thiel, M., Kurths, J., Grebogi, C.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 76, no. 3, 036211
    Contributions to Journals: Articles

  • Recurrence analysis of strange nonchaotic dynamics

    Ngamga, E. J., Nandi, A., Ramaswamy, R., Romano, M. C., Thiel, M., Kurths, J.
    Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 75, no. 3, 036222
    Contributions to Journals: Articles

  • Recurrence Plots for the Analysis of Complex Systems

    Marwan, N., Romano, M. C., Thiel, M., Kurths, J.
    Physics Reports, vol. 438, no. 5-6, pp. 237-329
    Contributions to Journals: Articles

  • Synchronization Analysis and Recurrences in Complex Systems

    Romano, M. C., Thiel, M., Kurths, J., Engbert, R., Rolfs, M., Kliegl, R.
    Handbook of Time Series Analysis: Recent Theoretical Developments and Applications. Schelter, B., Winterhalder, M., Timmer, J. (eds.). Wiley-VCH, pp. 231-264
    Chapters in Books, Reports and Conference Proceedings: Chapters

  • Recurrence plot analyses suggests a novel reference system in newborn spontaneous movements

    Aszmann, B., Thiel, M., Romano, M. C., Niemitz, C.
    Behavior Research Methods, vol. 38, no. 3, pp. 400-406
    Contributions to Journals: Articles

  • Twin surrogates to test for complex synchronisation

    Thiel, M., Romano, M. C., Kurths, J., Rolfs, M., Kliegl, R.
    Europhysics Letters, vol. 75, no. 4, pp. 535-541
    Contributions to Journals: Articles

  • Shrimp Structure and Associated Dynamics in Parametrically Excited Oscillators

    Zou, Y., Thiel, M., Romano, M. C., Bi, Q., Kurths, J.
    International Journal of Bifurcation and Chaos, vol. 16, no. 12, pp. 3567-3579
    Contributions to Journals: Articles

  • Spurious Structures in Recurrence Plots Induced by Embedding

    Thiel, M., Romano, M. C., Kurths, J.
    Nonlinear Dynamics, vol. 44, no. 1-4, pp. 299-305
    Contributions to Journals: Articles

  • Detection of Synchronization for Non-Phase Coherent and Non-stationary Data

    Romano, M. C., Thiel, M., Kurths, J., Kiss, I. Z., Hudson, J. L.
    Europhysics Letters, vol. 71, no. 3, pp. 466-472
    Contributions to Journals: Articles

  • Generalized synchronization indices based on recurrences in phase space

    Romano, M. C., Thiel, M., Kurths, J.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings

  • Stability of terrestrial planets in the habitable zone of GI 777 A, HD 72659, GI 614, 47 Uma and HD 4208

    Asghari, N., Broeg, C., Carone, L., Casas-Miranda, R., Palacio, J., Csillik, I., Dvorak, R., Freistetter, F., Hadjivantsides, G., Hussmann, H., Khramova, A., Khristoforova, M., Khromova, I., Kitiashivilli, I., Kozlowski, S., Laaskso, T., Laczkowski, T., Lytvinenko, D., Miloni, O., Morishima, R., Moro-Martin, A., Paksyutov, V., Pal, A., Patidar, V., Pecnik, B., Peles, O., Pyo, J., Quinn, T., Rodriguez, A., Romano, M. C., Saikia, E., Stadel, J., Thiel, M., Todorovic, N., Veras, D., Neto, E., Vilagi, J., von Bloh, W., Zechner, R., Zhuchkova, E.
    Astronomy & Astrophysics, vol. 426, no. 1, pp. 353-365
    Contributions to Journals: Articles

  • How much information is contained in a Recurrence Plot?

    Thiel, M., Romano, M. C., Kurths, J.
    Physics Letters A, vol. 330, no. 5, pp. 343-349
    Contributions to Journals: Articles

  • Multivariate Recurrence Plots

    Romano, M. C., Thiel, M., Kurths, J., von Bloh, W.
    Physics Letters A, vol. 330, no. 3-4, pp. 214-223
    Contributions to Journals: Articles

  • Estimation of dynamical invariants without embedding by recurrence plots

    Thiel, M., Romano, M. C., Kurths, J., Read, P.
    Chaos, vol. 14, no. 2, pp. 234-243
    Contributions to Journals: Articles

  • Surrogate-based hypothesis test without surrogates

    Thiel, M., Romano, M. C., Schwarz, U., Kurths, J., Timmer, J.
    International Journal of Bifurcation and Chaos, vol. 14, no. 6, pp. 2107-2114
    Contributions to Journals: Articles

  • Analytical Description of Recurrence Plots of White Noise and Chaotic Processes

    Thiel, M., Romano, M. C., Kurths, J.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings

  • Influence of observational noise on the recurrence quantification analysis

    Thiel, M., Romano, M. C., Kurths, J., Meucci, R., Allaria, E., Arecchi, F. T.
    Physica. D, Nonlinear Phenomena, vol. 171, pp. 138
    Contributions to Journals: Articles

  • Conceptual Model for Runoff from a Forested Catchment

    Romano, M. C., Thiel, M., Schwarz, U., Kurths, J., Lange, H., Hauhs, M.
    International Journal of Bifurcation and Chaos, vol. 11, pp. 2567
    Contributions to Journals: Articles

  • Conceptual Modeling of the Runoff in a Catchment using Memory

    Romano, M. C., Thiel, M., Schwarz, U., Kurths, J.
    Chapters in Books, Reports and Conference Proceedings: Conference Proceedings

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