Dr Alessandro De Moura | The Institute of Medical Sciences

Dr Alessandro De Moura

Reader

Email Address: a.moura@abdn.ac.uk
Telephone Number: +44 (0)1224 272505
School/Department: School of Natural and Computing Sciences

Biography

Lecturer in Physics. Dr de Moura holds a PhD in Physics from Universidade Estadual de Campinas, Brazil.

Dr Moura has a background in dynamical systems and statistical physics. His research interests in these areas include transient chaos, nonhyperbolic chaotic scattering, and chaotic advection of flows. Since moving to Aberdeen, he has been applying physics and mathematics to understand fundamental biological processes, in collaborations with biologists in Aberdeen and elsewhere. Biological problems he is actively working on include: mathematical modelling of DNA replication, dynamics and regulation of protein synthesis in uni-cellular organisms, modelling the responses of pathogenic fungi species to combinations of stresses, homeostasis of bacteria, macromolecular dynamics in cellular membranes.

Publications

Page 1 of 2 Results 1 to 50 of 76

Mathematical model for the distribution of DNA replication origins
2024 - Published
de Moura, A., Karschau, J.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 110, no. 3, 034408
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.110.034408
Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights
2017 - Published
Fernandes, L. D., Moura, A. P., Ciandrini, L.
Scientific Reports, vol. 7, 17409
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1038/s41598-017-17618-1
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9883/1/Gene_length_as_a_regulator_for_ribosome_recruitment_and_protein_synthesis_theoretical_insights.pdf
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9883/2/41598_2017_17618_MOESM7_ESM_002_.pdf
- [ONLINE] View publication in Scopus
Cooperative response and clustering: Consequences of membrane-mediated interactions among mechanosensitive channels
2017 - Published
Fernandes, L. D., Guseva, K., De Moura, A. P.
Physical Review E, vol. 96, no. 2, 022410
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.96.022410
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9348/1/Cooperative_response_and_clustering_Consequences_of_membrane_mediated.pdf
- [ONLINE] View publication in Scopus
Frontiers of chaotic advection
2017 - Published
Aref, H., Blake, J. R., Budišić, M., Cardoso, S. S., Cartwright, J. H., Clercx, H. J., El Omari, K., Feudel, U., Golestanian, R., Gouillart, E., Van Heijst, G. F., Krasnopolskaya, T. S., Le Guer, Y., MacKay, R. S., Meleshko, V. V., Metcalfe, G., Mezić, I., De Moura, A. P., Piro, O., Speetjens, M. F., Sturman, R., Thiffeault, J. L., Tuval, I.
Reviews of Modern Physics, vol. 89, no. 2, 025007
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/RevModPhys.89.025007
- [ONLINE] View publication in Scopus
Brief isoflurane anaesthesia affects differential gene expression, gene ontology and gene networks in rat brain
2017 - Published
Lowes, D. A., Galley, H. F., Moura, A. P. S., Webster, N. R.
Behavioural Brain Research, vol. 317, pp. 453-460
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.bbr.2016.09.045
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/9322/1/BBR_Lowes_et_al_2016_accepted_version.pdf
Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach
2015 - Published
Delgado-SanMartin, J. A., Hare, J. I., de Moura, A. P. S., Yates, J. W. T., Wang, E. (ed.)
PLoS Computational Biology , vol. 11, no. 10, e1004550
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pcbi.1004550
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/7860/1/oxygen_driven_tumour_growth_model.PDF
- [ONLINE] View publication in Scopus
Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans
2015 - Published
Chandrasekaran, K., Kaloriti, D., Tillmann, A. T., Yin, Z., Herrero De Dios, C., Jacobsen, M. D., Belmonte, R. C., Cameron, G., Haynes, K., Grebogi, C., de Moura, A. P. S., Gow, N. A. R., Thiel, M., Quinn, J., Brown, A. J. P., Romano, M. C.
PloS ONE, vol. 10, no. 9, 0137750
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1371/journal.pone.0137750
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/4938/1/Integrative_Model_of_Oxidative_Stress.pdf
Diffusion in randomly perturbed dissipative dynamics
2014 - Published
Rodrigues, C. S., Chechkin, A. V., Moura, A. P. S. d., Grebogi, C., Klages, R.
Europhysics Letters, vol. 108, no. 4, 40002
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1209/0295-5075/108/40002
Strange eigenmodes and chaotic advection in open fluid flows
2014 - Published
De Moura, A. P. S.
Europhysics Letters, vol. 106, no. 3, 34002
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1209/0295-5075/106/34002
- [ONLINE] View publication in Scopus
The dynamics of genome replication using deep sequencing
2014 - Published
Müller, C. A., Hawkins, M., Retkute, R., Malla, S., Wilson, R., Blythe, M. J., Nakato, R., Komata, M., Shirahige, K., de Moura, A. P. S., Nieduszynski, C. A.
Nucleic Acids Research, vol. 42, no. 1, e3
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkt878
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3066/1/nar.gkt878.full.pdf
Dynamical Collapse of Trajectories Part I: Homoclinic Tangles in Systems with Dry Friction
2014 - Published
Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
- [ONLINE] http://enoc2014.conf.tuwien.ac.at/index.php/14-minisymposia/49-ms-10
- [ONLINE] https://drive.google.com/file/d/166iiWmL_Gpg7QKFSedd-o6-L22MX9T4U/view
Dynamical Collapse of Trajectories Part II: Limit Set of a Horseshoe-like Map
2014 - Published
Biemond, J. J. B., Moura, A. P., Grebogi, C., van de Wouw, N., Nijmeijer, H.
Chapters in Books, Reports and Conference Proceedings: Conference Proceedings
- [ONLINE] https://drive.google.com/file/d/1cVf7HarXRQIJuat26fve5zt64kOJwltF/view
- [ONLINE] http://enoc2014.conf.tuwien.ac.at/
The role of asymmetries in rock-paper-scissors biodiversity models
2014 - Published
Timpanaro, A. M., Grebogi, C., de Moura, A. P. S.
XXXVI Encontro Nacional de Física da Matéria Condensada
Contributions to Conferences: Abstracts
- [ONLINE] https://sec.sbfisica.org.br/eventos/enfmc/xxxvi/sys/resumos/R0153-1.pdf
- [ONLINE] XXXVI ENFMC
High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination
2013 - Published
Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S., Nieduszynski, C. A.
Cell Reports, vol. 5, no. 4, pp. 1132-1141
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.celrep.2013.10.014
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3065/1/Hawkins_et_al._2013_High_Resolution_Replication_Profiles_Define_the_Stochastic_Nature_of_Genome_Replication_Initiation_and_Terminati.pdf
Stochastic association of neighboring replicons creates replication factories in budding yeast
2013 - Published
Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S., Tanaka, T. U.
Journal of Cell Biology, vol. 202, no. 7, pp. 1001-1012
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1083/jcb.201306143
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3009/1/J_Cell_Biol_2013_Saner_1001_12.pdf
Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I
2013 - Published
Ozyamak, E., de Almeida, C., de Moura, A. P. S., Miller, S., Booth, I. R.
Molecular Microbiology, vol. 88, no. 5, pp. 936-950
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1111/mmi.12234
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3439/1/integrated_stress_response.pdf
Effects of bounded random perturbations on discrete dynamical systems
2013 - Published
Rodrigues, C. S., de Moura, A. P. S., Grebogi, C.
Bounded noises in physics, biology and engineering. d'Onofrio, A. (ed.). Birkhäuser, pp. 151-168, 17 pages
Chapters in Books, Reports and Conference Proceedings: Chapters
- [ONLINE] DOI: https://doi.org/10.1007/978-1-4614-7385-5_10
Combinatorial stresses kill pathogenic Candida species
2012 - Published
Kaloriti, D., Tillmann, A., Cook, E., Jacobsen, M., You, T., Lenardon, M., Ames, L., Barahona, M., Chandrasekaran, K., Coghill, G., Goodman, D., Gow, N. A. R., Grebogi, C., Ho, H., Ingram, P., McDonagh, A., de Moura, A. P. S., Pang, W., Puttnam, M., Radmaneshfar, E., Romano, M. C., Silk, D., Stark, J., Stumpf, M., Thiel, M., Thorne, T., Usher, J., Yin, Z., Haynes, K., Brown, A. J. P.
Medical Mycology, vol. 50, no. 7, pp. 699-709
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.3109/13693786.2012.672770
Impact of combinatorial stresses upon Candida albicans
2012 - Published
Kaloriti, D., Tillmann, A., Jacobsen, M., Yin, Z., Patterson, M., Radmaneshfar, E., You, T., Chandrasekaran, K., Pang, W., Coghill, G., de Moura, A. P. S., Thiel, M., Romano, M. C., Grebogi, C., Haynes, K., Quinn, J., Gow, N. A. R., Brown, A. J. P.
Mycoses, vol. 55, no. Suppl. 4, pp. 15
Contributions to Journals: Abstracts
- [ONLINE] DOI: https://doi.org/10.1111/j.1439-0507.2012.02204.x
- [ONLINE] View publication in Scopus
A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi
2012 - Published
You, T., Ingram, P., Jacobsen, M. D., Cook, E., McDonagh, A., Thorne, T., Lenardon, M. D., de Moura, A. P. S., Romano, M. C., Thiel, M., Stumpf, M., Gow, N. A. R., Haynes, K., Grebogi, C., Stark, J., Brown, A. J. P.
BMC Research Notes, vol. 5, 258
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1186/1756-0500-5-258
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3772/1/A_systems_biology_analysis.pdf
Dynamical collapse of trajectories
2012 - Published
Biemond, J. J. B., de Moura, A. P. S., Grebogi, C., van de Wouw, N., Nijmeijer, H.
Europhysics Letters, vol. 98, no. 2, 20001
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1209/0295-5075/98/20001
- [ONLINE] https://drive.google.com/file/d/1nwond_aq6Ic5z6WzyMQ4OL4ByWRXjSqV/view
Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow?
2012 - Published
Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N., Grebogi, C.
Computers in Biology and Medicine, vol. 42, no. 3, pp. 276-281
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.compbiomed.2011.07.002
Optimal placement of origins for DNA replication
2012 - Published
Karschau, J., Blow, J. J., de Moura, A. P. S.
Physical Review Letters, vol. 108, no. 5, 058101
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.108.058101
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2553/1/1202.0433v1.pdf
Optimality in DNA repair
2012 - Published
Richard, M. C., Fryett, M., Miller, S., Booth, I., Grebogi, C., Moura, A.
Journal of Theoretical Biology, vol. 292, pp. 39-43
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.jtbi.2011.08.024
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/3183/1/JTB.pdf
Mixing and Chaos in Open Flows
2012 - Published
de Moura, A. P. S., Feudel, U., Gouillart, E.
Advances in Applied Mechanics. van der Giessen, E., Aref, H., Clercx, H., Speetjens, M. (eds.). Elsevier, pp. 1-50, 50 pages
Chapters in Books, Reports and Conference Proceedings: Chapters
- [ONLINE] DOI: https://doi.org/10.1016/B978-0-12-380876-9.00001-X
Reacting particles in open chaotic flows
2011 - Published
de Moura, A. P. S.
Physical Review Letters, vol. 107, no. 27, 274501
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.107.274501
Nonlinear dynamics: a brief introduction
2011 - Published
de Moura, A. P. S., Grebogi, C.
Handbook of Statistical Systems Biology. Stumpf, M., Girolami, M., Balding, D. (eds.). Wiley-Blackwell, pp. 331-338
Chapters in Books, Reports and Conference Proceedings: Chapters
- [ONLINE] DOI: https://doi.org/10.1002/9781119970606.ch16
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2144/1/c16_1.pdf
- [ONLINE] View publication in Scopus
Dynamics of DNA replication in yeast
2011 - Published
Retkute, R., Nieduszynski, C., de Moura, A.
Physical Review Letters, vol. 107, no. 6, 068103
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevLett.107.068103
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2149/1/PhysRevLett.107.068103.pdf
A matter of life or death: modeling DNA damage and repair in bacteria
2011 - Published
Karschau, J., de Almeida, C., Richard, M. C., Miller, S., Booth, I. R., Grebogi, C., de Moura, A. P. S.
Biophysical Journal, vol. 100, no. 4, pp. 814-821
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1016/j.bpj.2010.12.3713
Collective response of self-organized clusters of mechanosensitive channels
2011 - Published
Guseva, K., Thiel, M., Miller, S., Grebogi, C., de Moura, A. P. S., Booth, I.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 83, no. 2, 020901(R)
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.83.020901
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2259/1/PhysRevE.83.020901.pdf
Dynamics: A Brief Introduction
2011 - Published
Moura, A., Grebogi, C.
Handbook of Statistical Systems Biology. Stumpf, M., Balding, D. J., Girolami, M. (eds.). Wiley
Chapters in Books, Reports and Conference Proceedings: Chapters
Fractal structures in stenoses and aneurysms in blood vessels
2010 - Published
Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. A., Grebogi, C.
Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences, vol. 368, no. 1933, pp. 5605-5617
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1098/rsta.2010.0268
Introduction to Focus Issue: Dynamics in Systems Biology
2010 - Published
Brackley, C. A., Ebenhoeh, O., Grebogi, C., Kurths, J., de Moura, A., Romano, M. C., Thiel, M.
Chaos, vol. 20, no. 4, 045101
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1063/1.3530126
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2527/1/Chaos_IntroductionToFocusIssue2010.pdf
Escape from attracting sets in randomly perturbed systems
2010 - Published
Rodrigues, C. S., Grebogi, C., de Moura, A. P. S.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 4, 046217
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.82.046217
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2174/1/PhysRevE.82.046217.pdf
Mathematical modelling of whole chromosome replication
2010 - Published
de Moura, A. P. S., Retkute, R., Hawkins, M., Nieduszynski, C. A.
Nucleic Acids Research, vol. 38, no. 17, pp. 5623-5633
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkq343
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2638/1/de_Moura_et_al._2010_Mathematical_modelling_of_whole_chromosome_replication.pdf
Random fluctuation leads to forbidden escape of particles
2010 - Published
Rodrigues, C., de Moura, A. P. S., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 82, no. 2, 026211
Contributions to Journals: Articles
- [ONLINE] http://link.aps.org/doi/10.1103/PhysRevE.82.026211
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.82.026211
Global and local depletion of ternary complex limits translational elongation
2010 - Published
Zhang, G., Fedyunin, I., Miekley, O., Valleriani, A., de Moura, A. P. S., Ignatova, Z.
Nucleic Acids Research, vol. 38, no. 14, pp. 4778-4787
Contributions to Journals: Articles
- [ONLINE] http://nar.oxfordjournals.org/content/38/14/4778
- [ONLINE] DOI: https://doi.org/10.1093/nar/gkq196
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2641/1/gkq196.pdf
Nonlinear Dynamics and Chaos: Advances and Perspectives
2010 - Published
Thiel, M. (ed.), Kurths, J. (ed.), Romano, M. C. (ed.), Karolyi, G. (ed.), de Moura, A. P. S. (ed.)
Springer Verlag, Dordrecht, Netherlands. 293 pages
Books and Reports: Books
- [ONLINE] DOI: https://doi.org/10.1007/978-3-642-04629-2
Dynamics of finite-size particles in chaotic fluid flows
2010 - Published
Cartwright, J., Feudel, U., Karolyi, G., de Moura, A. P. S., Piro, O., Tel, T.
Nonlinear Dynamics and Chaos: Advances and Perspectives. Springer, pp. 51-89, 39 pages
Chapters in Books, Reports and Conference Proceedings: Chapters
Emerging attractors and the transition from dissipative to conservative dynamics
2009 - Published
Rodrigues, C. S., de Moura, A. P. S., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 80, no. 2, 026205
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.80.026205
Chaotic advection in blood flow
2009 - Published
Schelin, A. B., Karolyi, G., de Moura, A. P. S., Booth, N. A., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 80, no. 1, 016213
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.80.016213
Chaos and nonlinear dynamics: Advances and perspectives
2008 - Published
Karolyi, G., de Moura, A., Romano, M. C., Thiel, M., Kurths, J.
The European Physical Journal. Special Topics, vol. 165, no. 1, pp. 1-4
Contributions to Journals: Editorials
- [ONLINE] DOI: https://doi.org/10.1140/epjst/e2008-00843-3
Finite-size particles, advection, and chaos: A collective phenomenon of intermittent bursting (vol 78, art no 056206, 2008): Publisher's Note
2008 - Published
Medrano-T, R. O., Moura, A., Tel, T., Caldas, I. L., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 6, 069901
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.069901
Finite-size particles, advection, and chaos: a collective phenomenon of intermittent bursting
2008 - Published
Medrano-T, R. O., Moura, A. P. S., Tel, T., Caldas, I. L., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 5, 056206
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.056206
Transition to chaotic scattering: Signatures in the differential cross section
2008 - Published
Schelin, A., de Moura, A. P. S., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 4 , 046204
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.046204
Onset of chaotic advection in open flows
2008 - Published
Biemond, J. J. B., Moura, A. P. S., Karolyi, G., Grebogi, C., Nijmeijer, H.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 78, no. 1, 016317
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.78.016317
- [OPEN ACCESS] http://aura.abdn.ac.uk/bitstream/2164/2607/1/Biemond_et_al._2008_Onset_of_chaotic_advection_in_open_flows.pdf
Strange nonchaotic repellers
2007 - Published
de Moura, A. P. S.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 76, no. 3, 036218
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.76.036218
Signatures of fractal clustering of aerosols advected under gravity
2007 - Published
Vilela, R. D., Tél, T., de Moura, A. P. S., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 75, no. 6, 065203(R)
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.75.065203
Traffic of particles in complex networks
2006 - Published
Germano, A., de Moura, A. P. S.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 74, no. 3 Part 2, 036117
Contributions to Journals: Articles
Finite-size effects on open chaotic advection
2006 - Published
Vilela, R. D., de Moura, A. P. S., Grebogi, C.
Physical Review. E, Statistical, Nonlinear and Soft Matter Physics, vol. 73, no. 2, 026302
Contributions to Journals: Articles
- [ONLINE] DOI: https://doi.org/10.1103/PhysRevE.73.026302

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Biography

Mathematical model for the distribution of DNA replication origins

Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Cooperative response and clustering: Consequences of membrane-mediated interactions among mechanosensitive channels

Frontiers of chaotic advection

Brief isoflurane anaesthesia affects differential gene expression, gene ontology and gene networks in rat brain

Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach

Integrative Model of Oxidative Stress Adaptation in the Fungal Pathogen Candida albicans

Diffusion in randomly perturbed dissipative dynamics

Strange eigenmodes and chaotic advection in open fluid flows

The dynamics of genome replication using deep sequencing

Dynamical Collapse of Trajectories Part I: Homoclinic Tangles in Systems with Dry Friction

Dynamical Collapse of Trajectories Part II: Limit Set of a Horseshoe-like Map

The role of asymmetries in rock-paper-scissors biodiversity models

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

Stochastic association of neighboring replicons creates replication factories in budding yeast

Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I

Effects of bounded random perturbations on discrete dynamical systems

Combinatorial stresses kill pathogenic Candida species

Impact of combinatorial stresses upon Candida albicans

A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi

Dynamical collapse of trajectories

Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow?

Optimal placement of origins for DNA replication

Optimality in DNA repair

Mixing and Chaos in Open Flows

Reacting particles in open chaotic flows

Nonlinear dynamics: a brief introduction

Dynamics of DNA replication in yeast

A matter of life or death: modeling DNA damage and repair in bacteria

Collective response of self-organized clusters of mechanosensitive channels

Dynamics: A Brief Introduction

Fractal structures in stenoses and aneurysms in blood vessels

Introduction to Focus Issue: Dynamics in Systems Biology

Escape from attracting sets in randomly perturbed systems

Mathematical modelling of whole chromosome replication

Random fluctuation leads to forbidden escape of particles

Global and local depletion of ternary complex limits translational elongation

Nonlinear Dynamics and Chaos: Advances and Perspectives

Dynamics of finite-size particles in chaotic fluid flows

Emerging attractors and the transition from dissipative to conservative dynamics

Chaotic advection in blood flow

Chaos and nonlinear dynamics: Advances and perspectives

Finite-size particles, advection, and chaos: A collective phenomenon of intermittent bursting (vol 78, art no 056206, 2008): Publisher's Note

Finite-size particles, advection, and chaos: a collective phenomenon of intermittent bursting

Transition to chaotic scattering: Signatures in the differential cross section

Onset of chaotic advection in open flows

Strange nonchaotic repellers

Signatures of fractal clustering of aerosols advected under gravity

Traffic of particles in complex networks

Finite-size effects on open chaotic advection

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